Results 1 - 20 of 45 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | - | 13642 | 0.67 | 0.999996 |
Target: 5'- gGCAGagacuGGGCGGcUGCAGggGGg- -3' miRNA: 3'- -CGUU-----CCCGCUuACGUCuuUUau -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | - | 16711 | 0.67 | 0.999996 |
Target: 5'- gGCAGagacuGGGCGGcUGCAGggGGg- -3' miRNA: 3'- -CGUU-----CCCGCUuACGUCuuUUau -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | - | 19780 | 0.67 | 0.999996 |
Target: 5'- gGCAGagacuGGGCGGcUGCAGggGGg- -3' miRNA: 3'- -CGUU-----CCCGCUuACGUCuuUUau -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | - | 22849 | 0.67 | 0.999996 |
Target: 5'- gGCAGagacuGGGCGGcUGCAGggGGg- -3' miRNA: 3'- -CGUU-----CCCGCUuACGUCuuUUau -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | - | 25918 | 0.67 | 0.999996 |
Target: 5'- gGCAGagacuGGGCGGcUGCAGggGGg- -3' miRNA: 3'- -CGUU-----CCCGCUuACGUCuuUUau -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | - | 28987 | 0.67 | 0.999996 |
Target: 5'- gGCAGagacuGGGCGGcUGCAGggGGg- -3' miRNA: 3'- -CGUU-----CCCGCUuACGUCuuUUau -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | - | 32056 | 0.67 | 0.999996 |
Target: 5'- gGCAGagacuGGGCGGcUGCAGggGGg- -3' miRNA: 3'- -CGUU-----CCCGCUuACGUCuuUUau -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | - | 35124 | 0.67 | 0.999996 |
Target: 5'- gGCAGagacuGGGCGGcUGCAGggGGg- -3' miRNA: 3'- -CGUU-----CCCGCUuACGUCuuUUau -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | - | 36554 | 0.69 | 0.999874 |
Target: 5'- uGguGGGGgGggUGguGGGAGUGg -3' miRNA: 3'- -CguUCCCgCuuACguCUUUUAU- -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | - | 36631 | 0.72 | 0.998134 |
Target: 5'- gGCGGGGGUG-GUGguGAAGGUGg -3' miRNA: 3'- -CGUUCCCGCuUACguCUUUUAU- -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | + | 37220 | 0.68 | 0.999987 |
Target: 5'- gGCAGGGGCaGggGCAGggGc-- -3' miRNA: 3'- -CGUUCCCGcUuaCGUCuuUuau -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | + | 40160 | 0.66 | 0.999999 |
Target: 5'- gGCAGGGGgGGggGCAGuGAGg- -3' miRNA: 3'- -CGUUCCCgCUuaCGUCuUUUau -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | + | 50559 | 0.71 | 0.999018 |
Target: 5'- --cAGGGCGggUGCcuGGggGAUGg -3' miRNA: 3'- cguUCCCGCuuACG--UCuuUUAU- -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | - | 54679 | 0.71 | 0.999382 |
Target: 5'- -gGAGGGCGAGgaGCGGAGGAa- -3' miRNA: 3'- cgUUCCCGCUUa-CGUCUUUUau -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | + | 57813 | 0.67 | 0.999996 |
Target: 5'- -gGGGGGCGAugggGCGGAAcGUGg -3' miRNA: 3'- cgUUCCCGCUua--CGUCUUuUAU- -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | + | 57881 | 0.67 | 0.999994 |
Target: 5'- -aGGGGGCGGcgGCcGGAGGUGg -3' miRNA: 3'- cgUUCCCGCUuaCGuCUUUUAU- -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | + | 61445 | 0.74 | 0.990849 |
Target: 5'- gGCGGGGGCGGcgGCGGGc---- -3' miRNA: 3'- -CGUUCCCGCUuaCGUCUuuuau -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | - | 61601 | 0.71 | 0.999382 |
Target: 5'- uGUggGGGCGGcgGCGGAc---- -3' miRNA: 3'- -CGuuCCCGCUuaCGUCUuuuau -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | - | 62319 | 0.72 | 0.99772 |
Target: 5'- aGUggGGGCGGGgccgGCGGggGAg- -3' miRNA: 3'- -CGuuCCCGCUUa---CGUCuuUUau -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | + | 64699 | 0.71 | 0.999516 |
Target: 5'- aGCcGGGGUGggUGUAGggGu-- -3' miRNA: 3'- -CGuUCCCGCuuACGUCuuUuau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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