miRNA display CGI


Results 1 - 20 of 60 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 1162 0.71 0.980232
Target:  5'- uGGUGAGGAcGGGGAcagGGGCa- -3'
miRNA:   3'- gCCACUUCUuCCCCU---CCUGcu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 20721 0.72 0.965951
Target:  5'- -cGUGAAGAAGuGGAGGACGu -3'
miRNA:   3'- gcCACUUCUUCcCCUCCUGCu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 30459 0.7 0.98447
Target:  5'- gCGGaUGAGGAGGcGGAGGACa- -3'
miRNA:   3'- -GCC-ACUUCUUCcCCUCCUGcu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 38518 0.72 0.954525
Target:  5'- aGGacGAAGGAGGGGAgacgaGGACGAc -3'
miRNA:   3'- gCCa-CUUCUUCCCCU-----CCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 43396 0.7 0.987495
Target:  5'- aCGGUGAgcgccccaccuagaGGGAGGGGGGGuaguuuaauaGCGGa -3'
miRNA:   3'- -GCCACU--------------UCUUCCCCUCC----------UGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 45931 0.68 0.997842
Target:  5'- ---cGAGGGAGaGGAGGACGAc -3'
miRNA:   3'- gccaCUUCUUCcCCUCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 51565 0.72 0.969264
Target:  5'- gGGUGguGgcGGcGGAGGACGGa -3'
miRNA:   3'- gCCACuuCuuCC-CCUCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 71612 0.73 0.94561
Target:  5'- gCGGUGuuagacauGGGgcaggccgugGGGGGAGGACGAg -3'
miRNA:   3'- -GCCACu-------UCU----------UCCCCUCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 73806 0.67 0.998208
Target:  5'- uCGGaUGAcgAGGAGGaGGAGGAgGGg -3'
miRNA:   3'- -GCC-ACU--UCUUCC-CCUCCUgCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 76224 0.67 0.999196
Target:  5'- aGGaUGAAGAAGGaGGAGaaaaaggaggaGACGAu -3'
miRNA:   3'- gCC-ACUUCUUCC-CCUC-----------CUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 84786 0.67 0.99852
Target:  5'- gCGGUcgaGGAGGAGGGGuacGGACu- -3'
miRNA:   3'- -GCCA---CUUCUUCCCCu--CCUGcu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 94854 0.69 0.994097
Target:  5'- aCGGUGGu---GGGGAcGGGCGAc -3'
miRNA:   3'- -GCCACUucuuCCCCU-CCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 99159 0.68 0.99692
Target:  5'- aCGGUGggGAaaAGGaGGGGGcCGu -3'
miRNA:   3'- -GCCACuuCU--UCC-CCUCCuGCu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 99835 0.67 0.998785
Target:  5'- aCGGUGGcuGGGcGGGAGGAgCGGc -3'
miRNA:   3'- -GCCACUucUUC-CCCUCCU-GCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 101323 0.75 0.877176
Target:  5'- gCGGgagGAggguGGAAGGGGAGGAgGAu -3'
miRNA:   3'- -GCCa--CU----UCUUCCCCUCCUgCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 105332 0.67 0.999009
Target:  5'- gCGGcugcugGAAGAGGGcgacgaGGAGGAUGAa -3'
miRNA:   3'- -GCCa-----CUUCUUCC------CCUCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 105921 0.68 0.997842
Target:  5'- gGGUGAAaccGAugucGGGGGuGGGCGGc -3'
miRNA:   3'- gCCACUU---CU----UCCCCuCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 115540 0.68 0.996349
Target:  5'- gGGUGAgaaagaggaGGAuGGGGGGGACc- -3'
miRNA:   3'- gCCACU---------UCUuCCCCUCCUGcu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 130573 0.7 0.98447
Target:  5'- -aGUGggGGAGGGGGaaacGGugGAa -3'
miRNA:   3'- gcCACuuCUUCCCCU----CCugCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 145687 0.75 0.869368
Target:  5'- uCGGac--GAAGGGGAGGACGAu -3'
miRNA:   3'- -GCCacuuCUUCCCCUCCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.