Results 41 - 60 of 60 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | - | 20361 | 0.7 | 0.982447 |
Target: 5'- uGGUGGAuccGGAGGGGGGaACGAg -3' miRNA: 3'- gCCACUU---CUUCCCCUCcUGCU- -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | - | 194546 | 0.71 | 0.980232 |
Target: 5'- uGGUGAGGAcGGGGAcagGGGCa- -3' miRNA: 3'- gCCACUUCUuCCCCU---CCUGcu -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | + | 1162 | 0.71 | 0.980232 |
Target: 5'- uGGUGAGGAcGGGGAcagGGGCa- -3' miRNA: 3'- gCCACUUCUuCCCCU---CCUGcu -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | - | 172557 | 0.71 | 0.980232 |
Target: 5'- gGGUGcucagGAGGAGcGGGAGGACa- -3' miRNA: 3'- gCCAC-----UUCUUC-CCCUCCUGcu -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | - | 94558 | 0.71 | 0.980232 |
Target: 5'- cCGGgGAGGGugGGGGGuAGGGCGGg -3' miRNA: 3'- -GCCaCUUCU--UCCCC-UCCUGCU- -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | - | 164970 | 0.71 | 0.975188 |
Target: 5'- aCGGUGgcGgcGGuGGAGGGCGc -3' miRNA: 3'- -GCCACuuCuuCC-CCUCCUGCu -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | + | 185121 | 0.71 | 0.97234 |
Target: 5'- gCGGUGgcGAAGGGGA--ACGAa -3' miRNA: 3'- -GCCACuuCUUCCCCUccUGCU- -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | + | 51565 | 0.72 | 0.969264 |
Target: 5'- gGGUGguGgcGGcGGAGGACGGa -3' miRNA: 3'- gCCACuuCuuCC-CCUCCUGCU- -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | - | 227412 | 0.72 | 0.965951 |
Target: 5'- cCGGUGGggccGGGAcGGGGuGGGACGAg -3' miRNA: 3'- -GCCACU----UCUU-CCCC-UCCUGCU- -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | + | 20721 | 0.72 | 0.965951 |
Target: 5'- -cGUGAAGAAGuGGAGGACGu -3' miRNA: 3'- gcCACUUCUUCcCCUCCUGCu -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | + | 38518 | 0.72 | 0.954525 |
Target: 5'- aGGacGAAGGAGGGGAgacgaGGACGAc -3' miRNA: 3'- gCCa-CUUCUUCCCCU-----CCUGCU- -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | + | 231970 | 0.72 | 0.954525 |
Target: 5'- ---cGggGggGGGGGGGGCGu -3' miRNA: 3'- gccaCuuCuuCCCCUCCUGCu -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | + | 71612 | 0.73 | 0.94561 |
Target: 5'- gCGGUGuuagacauGGGgcaggccgugGGGGGAGGACGAg -3' miRNA: 3'- -GCCACu-------UCU----------UCCCCUCCUGCU- -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | - | 51730 | 0.73 | 0.94418 |
Target: 5'- uGGUGAAGGauGugauguacacggccGGGGAGGGCGAc -3' miRNA: 3'- gCCACUUCU--U--------------CCCCUCCUGCU- -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | - | 52958 | 0.73 | 0.935618 |
Target: 5'- aCGGagGAGGAAaGGGAGGAUGAa -3' miRNA: 3'- -GCCa-CUUCUUcCCCUCCUGCU- -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | - | 87737 | 0.73 | 0.935618 |
Target: 5'- cCGGgccgccUGAGGAAGGGGAGGAg-- -3' miRNA: 3'- -GCC------ACUUCUUCCCCUCCUgcu -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | - | 93940 | 0.74 | 0.918576 |
Target: 5'- gGGUGAGGggGGGGGuuacGGugGu -3' miRNA: 3'- gCCACUUCuuCCCCU----CCugCu -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | + | 101323 | 0.75 | 0.877176 |
Target: 5'- gCGGgagGAggguGGAAGGGGAGGAgGAu -3' miRNA: 3'- -GCCa--CU----UCUUCCCCUCCUgCU- -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | + | 145687 | 0.75 | 0.869368 |
Target: 5'- uCGGac--GAAGGGGAGGACGAu -3' miRNA: 3'- -GCCacuuCUUCCCCUCCUGCU- -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | - | 193650 | 1.01 | 0.050549 |
Target: 5'- gCGGUGAAGAAGGGGAGGACGAc -3' miRNA: 3'- -GCCACUUCUUCCCCUCCUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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