miRNA display CGI


Results 41 - 60 of 60 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 20361 0.7 0.982447
Target:  5'- uGGUGGAuccGGAGGGGGGaACGAg -3'
miRNA:   3'- gCCACUU---CUUCCCCUCcUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 194546 0.71 0.980232
Target:  5'- uGGUGAGGAcGGGGAcagGGGCa- -3'
miRNA:   3'- gCCACUUCUuCCCCU---CCUGcu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 1162 0.71 0.980232
Target:  5'- uGGUGAGGAcGGGGAcagGGGCa- -3'
miRNA:   3'- gCCACUUCUuCCCCU---CCUGcu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 172557 0.71 0.980232
Target:  5'- gGGUGcucagGAGGAGcGGGAGGACa- -3'
miRNA:   3'- gCCAC-----UUCUUC-CCCUCCUGcu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 94558 0.71 0.980232
Target:  5'- cCGGgGAGGGugGGGGGuAGGGCGGg -3'
miRNA:   3'- -GCCaCUUCU--UCCCC-UCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 164970 0.71 0.975188
Target:  5'- aCGGUGgcGgcGGuGGAGGGCGc -3'
miRNA:   3'- -GCCACuuCuuCC-CCUCCUGCu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 185121 0.71 0.97234
Target:  5'- gCGGUGgcGAAGGGGA--ACGAa -3'
miRNA:   3'- -GCCACuuCUUCCCCUccUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 51565 0.72 0.969264
Target:  5'- gGGUGguGgcGGcGGAGGACGGa -3'
miRNA:   3'- gCCACuuCuuCC-CCUCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 227412 0.72 0.965951
Target:  5'- cCGGUGGggccGGGAcGGGGuGGGACGAg -3'
miRNA:   3'- -GCCACU----UCUU-CCCC-UCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 20721 0.72 0.965951
Target:  5'- -cGUGAAGAAGuGGAGGACGu -3'
miRNA:   3'- gcCACUUCUUCcCCUCCUGCu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 38518 0.72 0.954525
Target:  5'- aGGacGAAGGAGGGGAgacgaGGACGAc -3'
miRNA:   3'- gCCa-CUUCUUCCCCU-----CCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 231970 0.72 0.954525
Target:  5'- ---cGggGggGGGGGGGGCGu -3'
miRNA:   3'- gccaCuuCuuCCCCUCCUGCu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 71612 0.73 0.94561
Target:  5'- gCGGUGuuagacauGGGgcaggccgugGGGGGAGGACGAg -3'
miRNA:   3'- -GCCACu-------UCU----------UCCCCUCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 51730 0.73 0.94418
Target:  5'- uGGUGAAGGauGugauguacacggccGGGGAGGGCGAc -3'
miRNA:   3'- gCCACUUCU--U--------------CCCCUCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 52958 0.73 0.935618
Target:  5'- aCGGagGAGGAAaGGGAGGAUGAa -3'
miRNA:   3'- -GCCa-CUUCUUcCCCUCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 87737 0.73 0.935618
Target:  5'- cCGGgccgccUGAGGAAGGGGAGGAg-- -3'
miRNA:   3'- -GCC------ACUUCUUCCCCUCCUgcu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 93940 0.74 0.918576
Target:  5'- gGGUGAGGggGGGGGuuacGGugGu -3'
miRNA:   3'- gCCACUUCuuCCCCU----CCugCu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 101323 0.75 0.877176
Target:  5'- gCGGgagGAggguGGAAGGGGAGGAgGAu -3'
miRNA:   3'- -GCCa--CU----UCUUCCCCUCCUgCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 145687 0.75 0.869368
Target:  5'- uCGGac--GAAGGGGAGGACGAu -3'
miRNA:   3'- -GCCacuuCUUCCCCUCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 193650 1.01 0.050549
Target:  5'- gCGGUGAAGAAGGGGAGGACGAc -3'
miRNA:   3'- -GCCACUUCUUCCCCUCCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.