miRNA display CGI


Results 41 - 60 of 60 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 87737 0.73 0.935618
Target:  5'- cCGGgccgccUGAGGAAGGGGAGGAg-- -3'
miRNA:   3'- -GCC------ACUUCUUCCCCUCCUgcu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 90078 0.67 0.998208
Target:  5'- gCGGUGcuGGcGGGGGuGGugGAc -3'
miRNA:   3'- -GCCACu-UCuUCCCCuCCugCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 93354 0.67 0.998785
Target:  5'- gGGUGGAGucuaGGGAGGGCu- -3'
miRNA:   3'- gCCACUUCuuc-CCCUCCUGcu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 93940 0.74 0.918576
Target:  5'- gGGUGAGGggGGGGGuuacGGugGu -3'
miRNA:   3'- gCCACUUCuuCCCCU----CCugCu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 94558 0.71 0.980232
Target:  5'- cCGGgGAGGGugGGGGGuAGGGCGGg -3'
miRNA:   3'- -GCCaCUUCU--UCCCC-UCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 94701 0.69 0.992053
Target:  5'- uCGGaUGggGGgucgagcgGGGGGAGGGCa- -3'
miRNA:   3'- -GCC-ACuuCU--------UCCCCUCCUGcu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 94804 0.67 0.999009
Target:  5'- cCGGgGAGGAgcgGGGuGGGGGugGGa -3'
miRNA:   3'- -GCCaCUUCU---UCC-CCUCCugCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 94911 0.66 0.999481
Target:  5'- uGG-GggGAGGGGaAGGGCGc -3'
miRNA:   3'- gCCaCuuCUUCCCcUCCUGCu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 95363 0.68 0.997415
Target:  5'- -aGUGggGGAGGGGAGcGucACGGg -3'
miRNA:   3'- gcCACuuCUUCCCCUC-C--UGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 119331 0.68 0.997415
Target:  5'- aGGagGAAGAAGaGGaaGAGGACGAc -3'
miRNA:   3'- gCCa-CUUCUUC-CC--CUCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 135512 0.67 0.998785
Target:  5'- aGGgaacaGGAGAAGGGcaGGGACGAc -3'
miRNA:   3'- gCCa----CUUCUUCCCc-UCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 150322 0.7 0.98447
Target:  5'- uGGUGGuGGAAgcGGuGGAGGACGAc -3'
miRNA:   3'- gCCACU-UCUU--CC-CCUCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 164970 0.71 0.975188
Target:  5'- aCGGUGgcGgcGGuGGAGGGCGc -3'
miRNA:   3'- -GCCACuuCuuCC-CCUCCUGCu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 166312 0.67 0.999196
Target:  5'- uGGaUGAAGAAGaGccagaacuGGAGGACGAc -3'
miRNA:   3'- gCC-ACUUCUUC-C--------CCUCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 172557 0.71 0.980232
Target:  5'- gGGUGcucagGAGGAGcGGGAGGACa- -3'
miRNA:   3'- gCCAC-----UUCUUC-CCCUCCUGcu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 184545 0.7 0.98447
Target:  5'- uGGUGccccacgccGGGAAGGGGAcGACGAg -3'
miRNA:   3'- gCCAC---------UUCUUCCCCUcCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 193650 1.01 0.050549
Target:  5'- gCGGUGAAGAAGGGGAGGACGAc -3'
miRNA:   3'- -GCCACUUCUUCCCCUCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 194546 0.71 0.980232
Target:  5'- uGGUGAGGAcGGGGAcagGGGCa- -3'
miRNA:   3'- gCCACUUCUuCCCCU---CCUGcu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 218360 0.69 0.993136
Target:  5'- gCGGacgaUGAGGAgcAGGGaGAGGAUGAu -3'
miRNA:   3'- -GCC----ACUUCU--UCCC-CUCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 227412 0.72 0.965951
Target:  5'- cCGGUGGggccGGGAcGGGGuGGGACGAg -3'
miRNA:   3'- -GCCACU----UCUU-CCCC-UCCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.