miRNA display CGI


Results 1 - 20 of 45 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 + 19880 0.71 0.958915
Target:  5'- cCGUUgACCUGGACcGACCGCc -3'
miRNA:   3'- aGUAGgUGGACUUGuCUGGCGa -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 + 22401 0.75 0.827258
Target:  5'- aCGUCCGCCUGuacGCGGACCGa- -3'
miRNA:   3'- aGUAGGUGGACu--UGUCUGGCga -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 - 29292 0.66 0.999217
Target:  5'- uUUGUCCACCgacGCGcGACCGCg -3'
miRNA:   3'- -AGUAGGUGGacuUGU-CUGGCGa -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 - 29897 0.66 0.998815
Target:  5'- aUCAUCCGCCaccacGGGCAGuucauGCCGUUg -3'
miRNA:   3'- -AGUAGGUGGa----CUUGUC-----UGGCGA- -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 - 35719 0.72 0.930619
Target:  5'- -gAUCCGCCUGGGCGGcucgcCCGCUu -3'
miRNA:   3'- agUAGGUGGACUUGUCu----GGCGA- -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 - 37481 0.67 0.997888
Target:  5'- uUCcUCUGCCUGGGCAcgcgcgucGGCCGCg -3'
miRNA:   3'- -AGuAGGUGGACUUGU--------CUGGCGa -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 - 41177 0.67 0.996981
Target:  5'- gCGUCCGCCcGAgcGCAGACgGUg -3'
miRNA:   3'- aGUAGGUGGaCU--UGUCUGgCGa -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 - 42711 0.68 0.995035
Target:  5'- aCAUCUACgUGGACAGcuucCCGCa -3'
miRNA:   3'- aGUAGGUGgACUUGUCu---GGCGa -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 - 43613 0.68 0.994195
Target:  5'- -uGUCCAUCgugGAcgaauaGCAGACCGCg -3'
miRNA:   3'- agUAGGUGGa--CU------UGUCUGGCGa -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 - 46157 0.66 0.998815
Target:  5'- cUCAUCgGCCUcGGGCGGcccgGCCGCc -3'
miRNA:   3'- -AGUAGgUGGA-CUUGUC----UGGCGa -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 + 56952 0.67 0.997888
Target:  5'- uUC-UCCACggcGAACAGACCGUUg -3'
miRNA:   3'- -AGuAGGUGga-CUUGUCUGGCGA- -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 + 59382 0.74 0.885195
Target:  5'- cUCAUCCACUUGcACAuGGCCGCc -3'
miRNA:   3'- -AGUAGGUGGACuUGU-CUGGCGa -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 + 60241 0.7 0.97805
Target:  5'- gCGUCCACCgcgacUGGGCacggcgGGACCGCUg -3'
miRNA:   3'- aGUAGGUGG-----ACUUG------UCUGGCGA- -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 - 66089 0.68 0.995341
Target:  5'- gCGUaCCGCCUGcugcgccgccgauuGCGGACCGCa -3'
miRNA:   3'- aGUA-GGUGGACu-------------UGUCUGGCGa -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 - 91732 0.66 0.998248
Target:  5'- uUCAUCCACCaUGAGCcacgaGGAacuaaCCGCg -3'
miRNA:   3'- -AGUAGGUGG-ACUUG-----UCU-----GGCGa -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 - 101294 0.66 0.999217
Target:  5'- aUCGUCCGCC-----GGACCGCa -3'
miRNA:   3'- -AGUAGGUGGacuugUCUGGCGa -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 + 102178 0.66 0.999034
Target:  5'- gCGagCACCUcGGugAGACCGCg -3'
miRNA:   3'- aGUagGUGGA-CUugUCUGGCGa -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 - 105402 0.66 0.998555
Target:  5'- --uUCCcCCUGAAC-GACCGCc -3'
miRNA:   3'- aguAGGuGGACUUGuCUGGCGa -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 - 111621 0.67 0.995773
Target:  5'- cCA-CCACCUGGAuCAcGCCGCUg -3'
miRNA:   3'- aGUaGGUGGACUU-GUcUGGCGA- -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 + 112585 0.66 0.999217
Target:  5'- uUCuUCUACCUGGcuggcGCAGugCGCc -3'
miRNA:   3'- -AGuAGGUGGACU-----UGUCugGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.