miRNA display CGI


Results 1 - 20 of 48 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 136285 0.66 0.968727
Target:  5'- gGCCCGCGGaUCGGccaGCGCuGUCu -3'
miRNA:   3'- gCGGGUGCCaGGCC---CGUGuUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 61990 0.66 0.968727
Target:  5'- gCGCUCGCGGUCacguccUGGGCAUccaccgcgccGAUCu -3'
miRNA:   3'- -GCGGGUGCCAG------GCCCGUG----------UUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 163293 0.66 0.968727
Target:  5'- uCGCCCGCGcUgUGGGCGCugcugGGUCg -3'
miRNA:   3'- -GCGGGUGCcAgGCCCGUG-----UUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 116028 0.66 0.965511
Target:  5'- aGCCC-CGGgaaggCCuGGCGCAGUUc -3'
miRNA:   3'- gCGGGuGCCa----GGcCCGUGUUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 79947 0.66 0.965511
Target:  5'- -aCCCGCGucgCCGGGCACGGc- -3'
miRNA:   3'- gcGGGUGCca-GGCCCGUGUUag -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 153640 0.66 0.965511
Target:  5'- gGCCaACGGUCgacgcaGGGCACGcgCg -3'
miRNA:   3'- gCGGgUGCCAGg-----CCCGUGUuaG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 88836 0.66 0.965177
Target:  5'- gCGCCCAUGG-CCGccacuguGGCGCGugaAUCg -3'
miRNA:   3'- -GCGGGUGCCaGGC-------CCGUGU---UAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 116876 0.66 0.963473
Target:  5'- gGCgUCGCGGUacguuggccguguaCGGGCGCGAUCc -3'
miRNA:   3'- gCG-GGUGCCAg-------------GCCCGUGUUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 211539 0.66 0.962068
Target:  5'- uGCCCcaACGGUaCGGGCugcagguaaaguGCGAUCa -3'
miRNA:   3'- gCGGG--UGCCAgGCCCG------------UGUUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 64905 0.66 0.962068
Target:  5'- gGCUaCAUGuGUCCGGGCAUcuUCg -3'
miRNA:   3'- gCGG-GUGC-CAGGCCCGUGuuAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 112266 0.66 0.962068
Target:  5'- uGCUCAUGGaCCGGGUGCGc-- -3'
miRNA:   3'- gCGGGUGCCaGGCCCGUGUuag -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 106602 0.66 0.958395
Target:  5'- aGUCCAUcuuUCCGGGCACcAUCg -3'
miRNA:   3'- gCGGGUGcc-AGGCCCGUGuUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 165722 0.66 0.954484
Target:  5'- gCGCCCguuGGUgaauguuaCCGGGCGCGAUg -3'
miRNA:   3'- -GCGGGug-CCA--------GGCCCGUGUUAg -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 78517 0.66 0.954484
Target:  5'- gCGCCgCcCGGacaCCGGGCGCcGUCa -3'
miRNA:   3'- -GCGG-GuGCCa--GGCCCGUGuUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 206573 0.66 0.954484
Target:  5'- gGCCC-CGGUCgCGGGUAguAUg -3'
miRNA:   3'- gCGGGuGCCAG-GCCCGUguUAg -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 64248 0.67 0.945935
Target:  5'- gGCCCGCGGgcaCGGGCGu---- -3'
miRNA:   3'- gCGGGUGCCag-GCCCGUguuag -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 50159 0.67 0.943177
Target:  5'- gCGCCCugGGgCCcuucgugggcaagauGGGCACcGUCu -3'
miRNA:   3'- -GCGGGugCCaGG---------------CCCGUGuUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 113141 0.67 0.943177
Target:  5'- uGCCCcuaaGCGGUggucgccacuaucacCCGGGCACuuuuGAUCg -3'
miRNA:   3'- gCGGG----UGCCA---------------GGCCCGUG----UUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 232952 0.67 0.936392
Target:  5'- uGCUCGCGGUCCagcucGGGCAgCAGc- -3'
miRNA:   3'- gCGGGUGCCAGG-----CCCGU-GUUag -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 197587 0.67 0.936392
Target:  5'- uGCUCGCGGUCCagcucGGGCAgCAGc- -3'
miRNA:   3'- gCGGGUGCCAGG-----CCCGU-GUUag -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.