miRNA display CGI


Results 1 - 20 of 55 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 216767 0.66 0.993118
Target:  5'- --aGGuaauagcccACGAGGCCGAcGACGUAc -3'
miRNA:   3'- agaCC---------UGCUCCGGCU-CUGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 196849 0.66 0.993118
Target:  5'- gCUGGguugcgcgGCGGGGCCGGcGACGgGg -3'
miRNA:   3'- aGACC--------UGCUCCGGCU-CUGCgU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 32152 0.66 0.993118
Target:  5'- gUCgGGAC-AGGCCaGcAGACGCAg -3'
miRNA:   3'- -AGaCCUGcUCCGG-C-UCUGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 233689 0.66 0.993118
Target:  5'- gCUGGguugcgcgGCGGGGCCGGcGACGgGg -3'
miRNA:   3'- aGACC--------UGCUCCGGCU-CUGCgU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 135590 0.66 0.993017
Target:  5'- uUCUGGACGugccucaugucacAGGCgccCGAGGCGUc -3'
miRNA:   3'- -AGACCUGC-------------UCCG---GCUCUGCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 218199 0.66 0.992051
Target:  5'- -aUGGGCGGcGGCCGAcGGCGg- -3'
miRNA:   3'- agACCUGCU-CCGGCU-CUGCgu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 37208 0.66 0.992051
Target:  5'- gUUUGcGACGcGGCCGAcGCGCGu -3'
miRNA:   3'- -AGAC-CUGCuCCGGCUcUGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 78006 0.66 0.992051
Target:  5'- aUCUuGACGcugcuGGCCGAGACgGCGu -3'
miRNA:   3'- -AGAcCUGCu----CCGGCUCUG-CGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 86401 0.66 0.992051
Target:  5'- gUUGGACGGGGagGAG-CGCAu -3'
miRNA:   3'- aGACCUGCUCCggCUCuGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 213836 0.66 0.990857
Target:  5'- ---cGACGAGGCUGAGAUGa- -3'
miRNA:   3'- agacCUGCUCCGGCUCUGCgu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 65174 0.66 0.990075
Target:  5'- gCUGGAUguggcgaccguaccaGAGGCUGAGAuCGCc -3'
miRNA:   3'- aGACCUG---------------CUCCGGCUCU-GCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 146251 0.66 0.989526
Target:  5'- cCUGGACGGGGgggaCCGGGG-GCGg -3'
miRNA:   3'- aGACCUGCUCC----GGCUCUgCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 164714 0.66 0.989526
Target:  5'- cCUGGACGccuGGgCGcGACGCGg -3'
miRNA:   3'- aGACCUGCu--CCgGCuCUGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 94366 0.66 0.989385
Target:  5'- cCUGGAgcaccaucCGGGGCCGugggccgggcaccGGGCGCGg -3'
miRNA:   3'- aGACCU--------GCUCCGGC-------------UCUGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 221643 0.66 0.988048
Target:  5'- aCUgGGGCGGGcGCgGGGugGCGg -3'
miRNA:   3'- aGA-CCUGCUC-CGgCUCugCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 35667 0.66 0.988048
Target:  5'- -gUGGcCGAGGCCGAcGAgGCc -3'
miRNA:   3'- agACCuGCUCCGGCU-CUgCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 112361 0.66 0.988048
Target:  5'- -gUGucCGAGGCgGAGGCGCu -3'
miRNA:   3'- agACcuGCUCCGgCUCUGCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 90027 0.67 0.986413
Target:  5'- gUCUGGGCGGcGGUCGuGGugGUg -3'
miRNA:   3'- -AGACCUGCU-CCGGC-UCugCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 141870 0.67 0.984612
Target:  5'- aUCUGaugaccGACGAGGCCGGcGGCgGCGu -3'
miRNA:   3'- -AGAC------CUGCUCCGGCU-CUG-CGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 38457 0.67 0.982636
Target:  5'- cUCcGGAUGAgcGGCCGcGGCGCGg -3'
miRNA:   3'- -AGaCCUGCU--CCGGCuCUGCGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.