miRNA display CGI


Results 41 - 60 of 180 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 221379 0.66 0.941976
Target:  5'- cCCGCucCGCCAccccgcGCCCG-CCCCa -3'
miRNA:   3'- -GGCGc-GCGGU------CGGGUaGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 38390 0.66 0.941976
Target:  5'- aCCGC-CGCC-GUCCGUCgCCg -3'
miRNA:   3'- -GGCGcGCGGuCGGGUAGgGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 153379 0.66 0.940524
Target:  5'- gCGCGUGCCcugcgucgaccguuGGCCCuucuUUCCCu -3'
miRNA:   3'- gGCGCGCGG--------------UCGGGu---AGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 45403 0.66 0.937047
Target:  5'- uCCGCuGcCGCCugcAGCCCAgUCUCCg -3'
miRNA:   3'- -GGCG-C-GCGG---UCGGGU-AGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 79298 0.66 0.937047
Target:  5'- -gGCGCGUgGGCCCAgCCUg -3'
miRNA:   3'- ggCGCGCGgUCGGGUaGGGg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 196795 0.66 0.931859
Target:  5'- gUCGCGCGCgGgguGCCCAcgCCCa -3'
miRNA:   3'- -GGCGCGCGgU---CGGGUa-GGGg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 143164 0.66 0.931859
Target:  5'- aCgGCGCGCCG---CAUCCCCa -3'
miRNA:   3'- -GgCGCGCGGUcggGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 31079 0.66 0.931859
Target:  5'- uUCGCGCucaCCAGCCuCGUcgaCCCCg -3'
miRNA:   3'- -GGCGCGc--GGUCGG-GUA---GGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 76723 0.66 0.931859
Target:  5'- cCCGCaguGCGCCGGCaaCAUCCgCg -3'
miRNA:   3'- -GGCG---CGCGGUCGg-GUAGGgG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 94654 0.66 0.931859
Target:  5'- uCCGCGC-CCuuCCCcUCCCCc -3'
miRNA:   3'- -GGCGCGcGGucGGGuAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 64224 0.66 0.931859
Target:  5'- aUCGCGCGCUAGCgCCGaugaCCUg -3'
miRNA:   3'- -GGCGCGCGGUCG-GGUag--GGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 144717 0.66 0.931859
Target:  5'- gCCgGCGCGCgAGCCCGUguagugcgagCCgCCg -3'
miRNA:   3'- -GG-CGCGCGgUCGGGUA----------GG-GG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 130480 0.66 0.931859
Target:  5'- gCGCgGCGCCgcGGCCUcgCCCa -3'
miRNA:   3'- gGCG-CGCGG--UCGGGuaGGGg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 124838 0.66 0.931859
Target:  5'- cUCGCGCGCCAG-CgGUCCg- -3'
miRNA:   3'- -GGCGCGCGGUCgGgUAGGgg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 233743 0.66 0.931859
Target:  5'- gUCGCGCGCgGgguGCCCAcgCCCa -3'
miRNA:   3'- -GGCGCGCGgU---CGGGUa-GGGg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 94398 0.66 0.931859
Target:  5'- aCCGgGCG-CGGCCCG-CUCCg -3'
miRNA:   3'- -GGCgCGCgGUCGGGUaGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 37076 0.67 0.928621
Target:  5'- aCUGCGaggGCCAGCCCAgcgacacgcacgagCCCUc -3'
miRNA:   3'- -GGCGCg--CGGUCGGGUa-------------GGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 169 0.67 0.92641
Target:  5'- aCGCGCGUCuguGUCUguuugaGUCCCCa -3'
miRNA:   3'- gGCGCGCGGu--CGGG------UAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 149080 0.67 0.92641
Target:  5'- aUCGC-CGCCGGCCgGUCgCUCg -3'
miRNA:   3'- -GGCGcGCGGUCGGgUAG-GGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 29704 0.67 0.92641
Target:  5'- aCuuGCGCUGGCCCGucgaccuuaUCCCCa -3'
miRNA:   3'- gGcgCGCGGUCGGGU---------AGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.