miRNA display CGI


Results 1 - 20 of 34 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 + 166525 0.66 0.984206
Target:  5'- cGCugGCUGGUgGGCAUCGGaGUCg -3'
miRNA:   3'- uCGugUGGUCG-UCGUAGUC-CAG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 + 120233 0.66 0.982107
Target:  5'- cGCAUACUGGCccugGGCAgcaGGGUCa -3'
miRNA:   3'- uCGUGUGGUCG----UCGUag-UCCAG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 + 6250 0.66 0.982107
Target:  5'- gGGCACACacucaAGCGGgGUCucggagcuccuAGGUCa -3'
miRNA:   3'- -UCGUGUGg----UCGUCgUAG-----------UCCAG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 + 164371 0.66 0.982107
Target:  5'- cAGCACGaaGGCGGCGcUCuuguGGUCa -3'
miRNA:   3'- -UCGUGUggUCGUCGU-AGu---CCAG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 - 133444 0.66 0.979804
Target:  5'- aGGC-CACUA-CAGCAUcCAGGUCc -3'
miRNA:   3'- -UCGuGUGGUcGUCGUA-GUCCAG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 + 104666 0.66 0.979804
Target:  5'- cGGCGCcgcCCGGgGGCcagucuccggGUCAGGUCg -3'
miRNA:   3'- -UCGUGu--GGUCgUCG----------UAGUCCAG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 - 115394 0.66 0.977287
Target:  5'- gAGCAgggACUGGCGGCAcugugggggUCGGGUCg -3'
miRNA:   3'- -UCGUg--UGGUCGUCGU---------AGUCCAG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 - 115659 0.66 0.977287
Target:  5'- gAGCAUauGCCGGUGGCcgcggccCAGGUCg -3'
miRNA:   3'- -UCGUG--UGGUCGUCGua-----GUCCAG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 + 103054 0.66 0.977287
Target:  5'- cGGCaACAacCCAGCGGCGUCAGc-- -3'
miRNA:   3'- -UCG-UGU--GGUCGUCGUAGUCcag -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 - 73576 0.66 0.971575
Target:  5'- cGCGCGCUGGCAcGCGgaugaGGGUCc -3'
miRNA:   3'- uCGUGUGGUCGU-CGUag---UCCAG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 - 118710 0.67 0.966312
Target:  5'- cGGCugugacuacaccauCACCGuCGGCAUCGGGUCc -3'
miRNA:   3'- -UCGu-------------GUGGUcGUCGUAGUCCAG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 - 147748 0.67 0.964895
Target:  5'- uGGCGCucccucauCCAGCGGCA-CAGGa- -3'
miRNA:   3'- -UCGUGu-------GGUCGUCGUaGUCCag -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 + 59556 0.67 0.957185
Target:  5'- cGGCACGCCaccugccguggGGCGGUGgugaCAGGUCc -3'
miRNA:   3'- -UCGUGUGG-----------UCGUCGUa---GUCCAG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 + 62747 0.68 0.948393
Target:  5'- cGCAgGCgGGCAGCG--GGGUCg -3'
miRNA:   3'- uCGUgUGgUCGUCGUagUCCAG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 - 3876 0.68 0.93848
Target:  5'- uAGUcCGCCAGCGGCAggucCAGGg- -3'
miRNA:   3'- -UCGuGUGGUCGUCGUa---GUCCag -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 + 123425 0.68 0.927422
Target:  5'- gGGUGCAgcuCCAGCcGCAgCAGGUCa -3'
miRNA:   3'- -UCGUGU---GGUCGuCGUaGUCCAG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 + 153607 0.69 0.92388
Target:  5'- gAGCACgcGCCGGCAGCGUgucugcacaaacuugCAGGcCg -3'
miRNA:   3'- -UCGUG--UGGUCGUCGUA---------------GUCCaG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 + 55340 0.69 0.921461
Target:  5'- aGGCGCGCUGGCuccAGCGUCAgccGGUUg -3'
miRNA:   3'- -UCGUGUGGUCG---UCGUAGU---CCAG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 + 155175 0.69 0.915212
Target:  5'- cAGgAUAUCuGCAGgAUCAGGUCa -3'
miRNA:   3'- -UCgUGUGGuCGUCgUAGUCCAG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 - 48955 0.69 0.915212
Target:  5'- cAGUACACaCGGCcgcuGGCAUggCAGGUCa -3'
miRNA:   3'- -UCGUGUG-GUCG----UCGUA--GUCCAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.