Viral miRNA display CGI

miRNA display CGI

Results 41 - 52 of 52 are showing below:
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Acc. No.	Name	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
Acc. No.	Predicted miRNA align pattern
MIMAT0003414	ebv-miR-BART6-5p	-45.8	NC_007605.1	-	82743	0.68	0.997145
MIMAT0003414	Target: 5'- gGGGCCUGaGGGcaGGGCCuGCCa -3' miRNA: 3'- -UUCGGAUaCCUaaCCUGGuUGG- -5'
MIMAT0003414	ebv-miR-BART6-5p	-45.8	NC_007605.1	-	84650	0.66	0.99985
MIMAT0003414	Target: 5'- cGAGCC--UGGAcacucagUGGGCCGACg -3' miRNA: 3'- -UUCGGauACCUa------ACCUGGUUGg -5'
MIMAT0003414	ebv-miR-BART6-5p	-45.8	NC_007605.1	-	91378	0.67	0.999577
MIMAT0003414	Target: 5'- cAGCCauaUGUGGAcagaUGGACCugAGCCa -3' miRNA: 3'- uUCGG---AUACCUa---ACCUGG--UUGG- -5'
MIMAT0003414	ebv-miR-BART6-5p	-45.8	NC_007605.1	-	104119	0.66	0.999744
MIMAT0003414	Target: 5'- gAGGCCUAUGGAg-GGGCUcuuGGCa -3' miRNA: 3'- -UUCGGAUACCUaaCCUGG---UUGg -5'
MIMAT0003414	ebv-miR-BART6-5p	-45.8	NC_007605.1	-	104963	0.73	0.9604
MIMAT0003414	Target: 5'- gAAGCCUcuccUGGAcccUGGACCAACUa -3' miRNA: 3'- -UUCGGAu---ACCUa--ACCUGGUUGG- -5'
MIMAT0003414	ebv-miR-BART6-5p	-45.8	NC_007605.1	-	114293	0.67	0.999322
MIMAT0003414	Target: 5'- -uGCCUGUGGAgauuaGGGgUAACCc -3' miRNA: 3'- uuCGGAUACCUaa---CCUgGUUGG- -5'
MIMAT0003414	ebv-miR-BART6-5p	-45.8	NC_007605.1	-	128217	0.66	0.999744
MIMAT0003414	Target: 5'- cAAGUCc--GGAUUGGgcACCAGCCu -3' miRNA: 3'- -UUCGGauaCCUAACC--UGGUUGG- -5'
MIMAT0003414	ebv-miR-BART6-5p	-45.8	NC_007605.1	-	137282	0.68	0.997631
MIMAT0003414	Target: 5'- -cGCCUcagGGAUcgUGGACuCGGCCa -3' miRNA: 3'- uuCGGAua-CCUA--ACCUG-GUUGG- -5'
MIMAT0003414	ebv-miR-BART6-5p	-45.8	NC_007605.1	-	140089	1.03	0.041736
MIMAT0003414	Target: 5'- aAAGCCUAUGGAUUGGACCAACCu -3' miRNA: 3'- -UUCGGAUACCUAACCUGGUUGG- -5'
MIMAT0003414	ebv-miR-BART6-5p	-45.8	NC_007605.1	-	143699	0.69	0.994305
MIMAT0003414	Target: 5'- --cCCUAUGGAggGGACCcuCCu -3' miRNA: 3'- uucGGAUACCUaaCCUGGuuGG- -5'
MIMAT0003414	ebv-miR-BART6-5p	-45.8	NC_007605.1	-	148921	0.66	0.999744
MIMAT0003414	Target: 5'- gAGGCCUG-GGAggGGGCgAGCa -3' miRNA: 3'- -UUCGGAUaCCUaaCCUGgUUGg -5'
MIMAT0003414	ebv-miR-BART6-5p	-45.8	NC_007605.1	-	151693	0.66	0.99985
MIMAT0003414	Target: 5'- cAGGCCUggcggGUGGAgauagGGACCAGa- -3' miRNA: 3'- -UUCGGA-----UACCUaa---CCUGGUUgg -5'

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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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