Results 21 - 36 of 36 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 142334 | 0.68 | 0.999786 |
Target: 5'- uGCAGCCGGgUCCggGGUUccGg -3' miRNA: 3'- -UGUCGGUUgAGGuaCCAAuaCa -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 142436 | 0.68 | 0.999786 |
Target: 5'- uGCAGCCGGgUCCggGGUUccGg -3' miRNA: 3'- -UGUCGGUUgAGGuaCCAAuaCa -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 142538 | 0.68 | 0.999786 |
Target: 5'- uGCAGCCGGgUCCggGGUUccGg -3' miRNA: 3'- -UGUCGGUUgAGGuaCCAAuaCa -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 142640 | 0.68 | 0.999786 |
Target: 5'- uGCAGCCGGgUCCggGGUUccGg -3' miRNA: 3'- -UGUCGGUUgAGGuaCCAAuaCa -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 142741 | 0.68 | 0.999786 |
Target: 5'- uGCAGCCGGgUCCggGGUUccGg -3' miRNA: 3'- -UGUCGGUUgAGGuaCCAAuaCa -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 142843 | 0.68 | 0.999786 |
Target: 5'- uGCAGCCGGgUCCggGGUUccGg -3' miRNA: 3'- -UGUCGGUUgAGGuaCCAAuaCa -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 142945 | 0.68 | 0.999786 |
Target: 5'- uGCAGCCGGgUCCggGGUUccGg -3' miRNA: 3'- -UGUCGGUUgAGGuaCCAAuaCa -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 143047 | 0.68 | 0.999786 |
Target: 5'- uGCAGCCGGgUCCggGGUUccGg -3' miRNA: 3'- -UGUCGGUUgAGGuaCCAAuaCa -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | + | 162535 | 0.67 | 0.999837 |
Target: 5'- gACAGCC-GCUCCAgcaGGUUcUGg -3' miRNA: 3'- -UGUCGGuUGAGGUa--CCAAuACa -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | - | 8602 | 0.75 | 0.958027 |
Target: 5'- aGCAGCgGACUCCAcUGGUUGUc- -3' miRNA: 3'- -UGUCGgUUGAGGU-ACCAAUAca -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | - | 59010 | 0.66 | 0.99995 |
Target: 5'- gACGuGcCCAGCUCCGUGGUccUGa -3' miRNA: 3'- -UGU-C-GGUUGAGGUACCAauACa -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | - | 85502 | 0.69 | 0.998584 |
Target: 5'- uAguGCCAGCUgCAUGGgaGUGg -3' miRNA: 3'- -UguCGGUUGAgGUACCaaUACa -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | - | 99602 | 0.66 | 0.999981 |
Target: 5'- gACAuGCaGACUCCA-GGUUAUGa -3' miRNA: 3'- -UGU-CGgUUGAGGUaCCAAUACa -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | - | 102338 | 0.77 | 0.89349 |
Target: 5'- cACGGUCAGCUUCAUGGUcGUGg -3' miRNA: 3'- -UGUCGGUUGAGGUACCAaUACa -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | - | 103206 | 0.69 | 0.998584 |
Target: 5'- uGCAGCUgaGACUCCAUGGa----- -3' miRNA: 3'- -UGUCGG--UUGAGGUACCaauaca -5' |
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MIMAT0003420 | ebv-miR-BART10 | -44.5 | NC_007605.1 | - | 147403 | 1.02 | 0.06686 |
Target: 5'- cACAGCCAACUCCAUGGUUAUGUa -3' miRNA: 3'- -UGUCGGUUGAGGUACCAAUACA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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