miRNA display CGI


Results 1 - 20 of 25 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003421 ebv-miR-BART11-5p -44.6 NC_007605.1 - 161076 0.66 0.999979
Target:  5'- gACAACUuuaucAGCGUgGCCGAGCcgGUCa -3'
miRNA:   3'- -UGUUGA-----UCGCG-UGGUUUGa-CAG- -5'
MIMAT0003421 ebv-miR-BART11-5p -44.6 NC_007605.1 - 150170 0.66 0.999971
Target:  5'- uGCAGCUGGaCGCGCagugccaaGAGCUGcCu -3'
miRNA:   3'- -UGUUGAUC-GCGUGg-------UUUGACaG- -5'
MIMAT0003421 ebv-miR-BART11-5p -44.6 NC_007605.1 + 126020 0.66 0.999971
Target:  5'- ----gUGGgGCACCAggAGCUGUCu -3'
miRNA:   3'- uguugAUCgCGUGGU--UUGACAG- -5'
MIMAT0003421 ebv-miR-BART11-5p -44.6 NC_007605.1 - 10698 0.67 0.9999
Target:  5'- aACAGCUAGUGUACUuuuguAGGCUG-Ca -3'
miRNA:   3'- -UGUUGAUCGCGUGG-----UUUGACaG- -5'
MIMAT0003421 ebv-miR-BART11-5p -44.6 NC_007605.1 + 122770 0.67 0.999867
Target:  5'- -aAACUggGGCGCGgCCAGGgUGUCa -3'
miRNA:   3'- ugUUGA--UCGCGU-GGUUUgACAG- -5'
MIMAT0003421 ebv-miR-BART11-5p -44.6 NC_007605.1 - 102754 0.67 0.999867
Target:  5'- -aGGCgc-UGCACCGGGCUGUCg -3'
miRNA:   3'- ugUUGaucGCGUGGUUUGACAG- -5'
MIMAT0003421 ebv-miR-BART11-5p -44.6 NC_007605.1 - 113051 0.67 0.999867
Target:  5'- gGCAGCaGGCGCugUAAcgUGUCg -3'
miRNA:   3'- -UGUUGaUCGCGugGUUugACAG- -5'
MIMAT0003421 ebv-miR-BART11-5p -44.6 NC_007605.1 - 4832 0.68 0.999701
Target:  5'- aGCGACUGGCGCaacACCGucuCUGg- -3'
miRNA:   3'- -UGUUGAUCGCG---UGGUuu-GACag -5'
MIMAT0003421 ebv-miR-BART11-5p -44.6 NC_007605.1 - 118646 0.68 0.999693
Target:  5'- cACGACUAGCGCcccuauaACCAcAACUGc- -3'
miRNA:   3'- -UGUUGAUCGCG-------UGGU-UUGACag -5'
MIMAT0003421 ebv-miR-BART11-5p -44.6 NC_007605.1 - 118065 0.69 0.999019
Target:  5'- cAUGACUAGCGCaACCAGcACgucGUCa -3'
miRNA:   3'- -UGUUGAUCGCG-UGGUU-UGa--CAG- -5'
MIMAT0003421 ebv-miR-BART11-5p -44.6 NC_007605.1 - 34443 0.69 0.998783
Target:  5'- gGCGGCUGGCcccgaggagGCGCCAGGCgcggggccgGUCg -3'
miRNA:   3'- -UGUUGAUCG---------CGUGGUUUGa--------CAG- -5'
MIMAT0003421 ebv-miR-BART11-5p -44.6 NC_007605.1 - 31374 0.69 0.998783
Target:  5'- gGCGGCUGGCcccgaggagGCGCCAGGCgcggggccgGUCg -3'
miRNA:   3'- -UGUUGAUCG---------CGUGGUUUGa--------CAG- -5'
MIMAT0003421 ebv-miR-BART11-5p -44.6 NC_007605.1 - 28305 0.69 0.998783
Target:  5'- gGCGGCUGGCcccgaggagGCGCCAGGCgcggggccgGUCg -3'
miRNA:   3'- -UGUUGAUCG---------CGUGGUUUGa--------CAG- -5'
MIMAT0003421 ebv-miR-BART11-5p -44.6 NC_007605.1 - 25236 0.69 0.998783
Target:  5'- gGCGGCUGGCcccgaggagGCGCCAGGCgcggggccgGUCg -3'
miRNA:   3'- -UGUUGAUCG---------CGUGGUUUGa--------CAG- -5'
MIMAT0003421 ebv-miR-BART11-5p -44.6 NC_007605.1 + 127940 0.69 0.998783
Target:  5'- gGCGACaGGUGC-CCAAGCUGg- -3'
miRNA:   3'- -UGUUGaUCGCGuGGUUUGACag -5'
MIMAT0003421 ebv-miR-BART11-5p -44.6 NC_007605.1 - 12961 0.69 0.998783
Target:  5'- gGCGGCUGGCcccgaggagGCGCCAGGCgcggggccgGUCg -3'
miRNA:   3'- -UGUUGAUCG---------CGUGGUUUGa--------CAG- -5'
MIMAT0003421 ebv-miR-BART11-5p -44.6 NC_007605.1 - 16030 0.69 0.998783
Target:  5'- gGCGGCUGGCcccgaggagGCGCCAGGCgcggggccgGUCg -3'
miRNA:   3'- -UGUUGAUCG---------CGUGGUUUGa--------CAG- -5'
MIMAT0003421 ebv-miR-BART11-5p -44.6 NC_007605.1 - 19099 0.69 0.998783
Target:  5'- gGCGGCUGGCcccgaggagGCGCCAGGCgcggggccgGUCg -3'
miRNA:   3'- -UGUUGAUCG---------CGUGGUUUGa--------CAG- -5'
MIMAT0003421 ebv-miR-BART11-5p -44.6 NC_007605.1 - 22167 0.69 0.998783
Target:  5'- gGCGGCUGGCcccgaggagGCGCCAGGCgcggggccgGUCg -3'
miRNA:   3'- -UGUUGAUCG---------CGUGGUUUGa--------CAG- -5'
MIMAT0003421 ebv-miR-BART11-5p -44.6 NC_007605.1 + 164920 0.69 0.9985
Target:  5'- -uGugUGGcCGCcgGCCAGGCUGUCa -3'
miRNA:   3'- ugUugAUC-GCG--UGGUUUGACAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.