miRNA display CGI


Results 21 - 40 of 56 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 57347 0.66 0.980776
Target:  5'- gGGCCCCGGGuGUcGGUgAGGg-- -3'
miRNA:   3'- -UUGGGGCCC-CGaCUAgUCCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 63645 0.67 0.95934
Target:  5'- gGGCaCCCGGGGgUGAUgaacUAGGUg- -3'
miRNA:   3'- -UUG-GGGCCCCgACUA----GUCCAau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 64450 0.67 0.963121
Target:  5'- uGCUgCGGccGGCUGGUCAGGg-- -3'
miRNA:   3'- uUGGgGCC--CCGACUAGUCCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 75713 0.66 0.978392
Target:  5'- cACCCCGGGGUgaggacacUGAgacguGGUUAg -3'
miRNA:   3'- uUGGGGCCCCG--------ACUagu--CCAAU- -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 80472 0.66 0.975797
Target:  5'- cGCCCCGGGGa-GGUaGGGUg- -3'
miRNA:   3'- uUGGGGCCCCgaCUAgUCCAau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 94178 0.7 0.885541
Target:  5'- uGACCgCGGGGCUGcagcCGGGUg- -3'
miRNA:   3'- -UUGGgGCCCCGACua--GUCCAau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 97968 0.66 0.982957
Target:  5'- uGACCUCGGGGaaGAUgGGGc-- -3'
miRNA:   3'- -UUGGGGCCCCgaCUAgUCCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 99555 0.76 0.58545
Target:  5'- -cCCCCGGGGCagaGAUCGGGg-- -3'
miRNA:   3'- uuGGGGCCCCGa--CUAGUCCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 102647 0.66 0.982957
Target:  5'- --aCCCGGGGCUGG-CAGu--- -3'
miRNA:   3'- uugGGGCCCCGACUaGUCcaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 110232 0.68 0.956947
Target:  5'- uAUCCCGGGGgucacgaggccaucuUUGAUCAGGa-- -3'
miRNA:   3'- uUGGGGCCCC---------------GACUAGUCCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 113537 0.68 0.955299
Target:  5'- cGCUaCUGGGGCUGAUCAGc--- -3'
miRNA:   3'- uUGG-GGCCCCGACUAGUCcaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 115795 0.67 0.963121
Target:  5'- aGGCCCUGGaGCUGAaCAGGa-- -3'
miRNA:   3'- -UUGGGGCCcCGACUaGUCCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 116041 0.76 0.57451
Target:  5'- cACCCCGGGGUggccaugacggUGGUCAGGa-- -3'
miRNA:   3'- uUGGGGCCCCG-----------ACUAGUCCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 116532 0.69 0.919431
Target:  5'- cGCCCCaccguGGGCaUGAUCAGGg-- -3'
miRNA:   3'- uUGGGGc----CCCG-ACUAGUCCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 126555 0.67 0.95934
Target:  5'- -cCCCCGGGGCccgcGGUCAcGGa-- -3'
miRNA:   3'- uuGGGGCCCCGa---CUAGU-CCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 127954 0.72 0.799176
Target:  5'- cGugCCCGGGGCgGAgggCAGGg-- -3'
miRNA:   3'- -UugGGGCCCCGaCUa--GUCCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 128137 0.67 0.96665
Target:  5'- cGCCCCGGGcacGCUGAgcgCGGaGUUu -3'
miRNA:   3'- uUGGGGCCC---CGACUa--GUC-CAAu -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 129825 0.68 0.946423
Target:  5'- gAGCCgaCCGGGGC--GUCAGGUa- -3'
miRNA:   3'- -UUGG--GGCCCCGacUAGUCCAau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 138961 0.71 0.853719
Target:  5'- cACCCCGGGGUgcuggGGUgGGGg-- -3'
miRNA:   3'- uUGGGGCCCCGa----CUAgUCCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 148510 0.69 0.906692
Target:  5'- gGACCCCGGGGCca---GGGUg- -3'
miRNA:   3'- -UUGGGGCCCCGacuagUCCAau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.