miRNA display CGI


Results 21 - 40 of 56 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 167707 0.68 0.941079
Target:  5'- -uCCCCGGGGCccGAgcgcgcgUCGGGUg- -3'
miRNA:   3'- uuGGGGCCCCGa-CU-------AGUCCAau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 167883 0.72 0.808767
Target:  5'- gAGCCCCGGGGCgGccCGGGg-- -3'
miRNA:   3'- -UUGGGGCCCCGaCuaGUCCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 168367 0.73 0.759166
Target:  5'- -gUCCCGGGGCggggGGUCGGGc-- -3'
miRNA:   3'- uuGGGGCCCCGa---CUAGUCCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 168815 0.72 0.808767
Target:  5'- gAGCCCCGGGGCgGccCGGGg-- -3'
miRNA:   3'- -UUGGGGCCCCGaCuaGUCCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 169299 0.73 0.759166
Target:  5'- -gUCCCGGGGCggggGGUCGGGc-- -3'
miRNA:   3'- uuGGGGCCCCGa---CUAGUCCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 169572 0.68 0.941079
Target:  5'- -uCCCCGGGGCccGAgcgcgcgUCGGGUg- -3'
miRNA:   3'- uuGGGGCCCCGa-CU-------AGUCCAau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 169747 0.72 0.808767
Target:  5'- gAGCCCCGGGGCgGccCGGGg-- -3'
miRNA:   3'- -UUGGGGCCCCGaCuaGUCCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 + 170230 0.73 0.759166
Target:  5'- -gUCCCGGGGCggggGGUCGGGc-- -3'
miRNA:   3'- uuGGGGCCCCGa---CUAGUCCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 13280 0.66 0.975797
Target:  5'- cGACCCUGGGGuCUG-UCuGGggGa -3'
miRNA:   3'- -UUGGGGCCCC-GACuAGuCCaaU- -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 16358 0.66 0.975797
Target:  5'- cGACCCUGGGGuCUG-UCuGGggGa -3'
miRNA:   3'- -UUGGGGCCCC-GACuAGuCCaaU- -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 19435 0.66 0.975797
Target:  5'- cGACCCUGGGGuCUG-UCuGGggGa -3'
miRNA:   3'- -UUGGGGCCCC-GACuAGuCCaaU- -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 22513 0.66 0.975797
Target:  5'- cGACCCUGGGGuCUG-UCuGGggGa -3'
miRNA:   3'- -UUGGGGCCCC-GACuAGuCCaaU- -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 25591 0.66 0.975797
Target:  5'- cGACCCUGGGGuCUG-UCuGGggGa -3'
miRNA:   3'- -UUGGGGCCCC-GACuAGuCCaaU- -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 28669 0.66 0.975797
Target:  5'- cGACCCUGGGGuCUG-UCuGGggGa -3'
miRNA:   3'- -UUGGGGCCCC-GACuAGuCCaaU- -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 34069 0.67 0.96665
Target:  5'- cACCCCGGGGagGAggcCGGGUg- -3'
miRNA:   3'- uUGGGGCCCCgaCUa--GUCCAau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 35131 0.71 0.853719
Target:  5'- cACCCCGGGGUgcuggGGUgGGGg-- -3'
miRNA:   3'- uUGGGGCCCCGa----CUAgUCCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 35480 1.02 0.01709
Target:  5'- cAACCCCGGGGCUGAUCAGGUUAa -3'
miRNA:   3'- -UUGGGGCCCCGACUAGUCCAAU- -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 44456 0.71 0.853719
Target:  5'- cACCCCGGGGCccg-CAGGg-- -3'
miRNA:   3'- uUGGGGCCCCGacuaGUCCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 46470 0.67 0.969934
Target:  5'- cGCCaCCGGGGCUcaaaacGUCGGGg-- -3'
miRNA:   3'- uUGG-GGCCCCGAc-----UAGUCCaau -5'
MIMAT0003427 rlcv-miR-rL1-1 -50.7 NC_006146.1 - 57287 0.66 0.984947
Target:  5'- -gUCgCGGGGCUGucguacagCAGGUUGg -3'
miRNA:   3'- uuGGgGCCCCGACua------GUCCAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.