miRNA display CGI


Results 1 - 20 of 27 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003429 rlcv-miR-rL1-3 -53.8 NC_006146.1 - 135215 0.66 0.934042
Target:  5'- uGgAGUGGGGGUGGUGGGGUGaCGc -3'
miRNA:   3'- uCgUCAUCUCUGCCGCUCCAC-GC- -5'
MIMAT0003429 rlcv-miR-rL1-3 -53.8 NC_006146.1 + 41295 0.66 0.934042
Target:  5'- cGGCGacGGAGACGGCgGAGGcaugGCGu -3'
miRNA:   3'- -UCGUcaUCUCUGCCG-CUCCa---CGC- -5'
MIMAT0003429 rlcv-miR-rL1-3 -53.8 NC_006146.1 - 130828 0.66 0.934042
Target:  5'- cGUAGUAGGGA-GGCGcGG-GCGg -3'
miRNA:   3'- uCGUCAUCUCUgCCGCuCCaCGC- -5'
MIMAT0003429 rlcv-miR-rL1-3 -53.8 NC_006146.1 + 151398 0.66 0.928677
Target:  5'- uGCAGgcgGGGGAUGGCGcGGcgGCa -3'
miRNA:   3'- uCGUCa--UCUCUGCCGCuCCa-CGc -5'
MIMAT0003429 rlcv-miR-rL1-3 -53.8 NC_006146.1 - 42443 0.66 0.911008
Target:  5'- cGCAuucGGGGACGGCGGGGacggGCa -3'
miRNA:   3'- uCGUca-UCUCUGCCGCUCCa---CGc -5'
MIMAT0003429 rlcv-miR-rL1-3 -53.8 NC_006146.1 + 2475 0.67 0.904596
Target:  5'- uGGCGGUGuGGcCGGCGGGGgcagGCa -3'
miRNA:   3'- -UCGUCAUcUCuGCCGCUCCa---CGc -5'
MIMAT0003429 rlcv-miR-rL1-3 -53.8 NC_006146.1 + 40066 0.67 0.897926
Target:  5'- uGGCAcauGU--GGGCGGCGGGGUGgGg -3'
miRNA:   3'- -UCGU---CAucUCUGCCGCUCCACgC- -5'
MIMAT0003429 rlcv-miR-rL1-3 -53.8 NC_006146.1 + 90093 0.67 0.891002
Target:  5'- gAGCAGUGGAGGCaGCGgagcAGGagGCa -3'
miRNA:   3'- -UCGUCAUCUCUGcCGC----UCCa-CGc -5'
MIMAT0003429 rlcv-miR-rL1-3 -53.8 NC_006146.1 + 56838 0.67 0.891002
Target:  5'- aGGCGGccucuGGCGGCGGGG-GCGg -3'
miRNA:   3'- -UCGUCaucu-CUGCCGCUCCaCGC- -5'
MIMAT0003429 rlcv-miR-rL1-3 -53.8 NC_006146.1 - 164984 0.68 0.868748
Target:  5'- aGGCaacGGUGGAGGCGGUGGGGa--- -3'
miRNA:   3'- -UCG---UCAUCUCUGCCGCUCCacgc -5'
MIMAT0003429 rlcv-miR-rL1-3 -53.8 NC_006146.1 + 44019 0.68 0.868748
Target:  5'- cGGCGGggaGGGGGCGGCcGAGG-GCc -3'
miRNA:   3'- -UCGUCa--UCUCUGCCG-CUCCaCGc -5'
MIMAT0003429 rlcv-miR-rL1-3 -53.8 NC_006146.1 + 44535 0.68 0.860855
Target:  5'- gGGCGG-AG-GACGGUGGGGggcUGCGg -3'
miRNA:   3'- -UCGUCaUCuCUGCCGCUCC---ACGC- -5'
MIMAT0003429 rlcv-miR-rL1-3 -53.8 NC_006146.1 + 51173 0.68 0.835841
Target:  5'- gGGCuGUGGAGcCGGgGAGGcUGCu -3'
miRNA:   3'- -UCGuCAUCUCuGCCgCUCC-ACGc -5'
MIMAT0003429 rlcv-miR-rL1-3 -53.8 NC_006146.1 - 43623 0.69 0.809918
Target:  5'- cGCAGgcuacugauggacgaGGAGACGGCGGGGgucGCa -3'
miRNA:   3'- uCGUCa--------------UCUCUGCCGCUCCa--CGc -5'
MIMAT0003429 rlcv-miR-rL1-3 -53.8 NC_006146.1 + 36505 0.7 0.770781
Target:  5'- cGGCAGgauagauGAGugGGUGAgGGUGCu -3'
miRNA:   3'- -UCGUCau-----CUCugCCGCU-CCACGc -5'
MIMAT0003429 rlcv-miR-rL1-3 -53.8 NC_006146.1 + 166690 0.7 0.760861
Target:  5'- uGGCAGgggGGAGACGGgGcaaugggagggGGGUGUGa -3'
miRNA:   3'- -UCGUCa--UCUCUGCCgC-----------UCCACGC- -5'
MIMAT0003429 rlcv-miR-rL1-3 -53.8 NC_006146.1 + 68270 0.7 0.750816
Target:  5'- cGCGGUGGAGG-GGCGGGGcguUGUGa -3'
miRNA:   3'- uCGUCAUCUCUgCCGCUCC---ACGC- -5'
MIMAT0003429 rlcv-miR-rL1-3 -53.8 NC_006146.1 - 95618 0.7 0.730392
Target:  5'- uGUGGUcacGGGGACGGCGGGGgccgGCa -3'
miRNA:   3'- uCGUCA---UCUCUGCCGCUCCa---CGc -5'
MIMAT0003429 rlcv-miR-rL1-3 -53.8 NC_006146.1 - 55155 0.7 0.730392
Target:  5'- cAGCGGUAGcGGCGGCGGcGGUcGCc -3'
miRNA:   3'- -UCGUCAUCuCUGCCGCU-CCA-CGc -5'
MIMAT0003429 rlcv-miR-rL1-3 -53.8 NC_006146.1 - 100135 0.71 0.720035
Target:  5'- uGCGGaGGAGGCGGgagcgGGGGUGCGa -3'
miRNA:   3'- uCGUCaUCUCUGCCg----CUCCACGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.