miRNA display CGI


Results 1 - 20 of 23 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003432 rlcv-miR-rL1-5-5p -48.3 NC_006146.1 - 84716 0.66 0.997576
Target:  5'- cGGCGCcugUACCGGCACgacguccgAGGa- -3'
miRNA:   3'- -UCGUGua-GUGGCCGUGa-------UCCaa -5'
MIMAT0003432 rlcv-miR-rL1-5-5p -48.3 NC_006146.1 - 90151 0.66 0.997092
Target:  5'- cAGCAC--CACCGGCACUGc--- -3'
miRNA:   3'- -UCGUGuaGUGGCCGUGAUccaa -5'
MIMAT0003432 rlcv-miR-rL1-5-5p -48.3 NC_006146.1 - 97918 0.66 0.997092
Target:  5'- cAGCACcUC-CCGGCA-UAGGUc -3'
miRNA:   3'- -UCGUGuAGuGGCCGUgAUCCAa -5'
MIMAT0003432 rlcv-miR-rL1-5-5p -48.3 NC_006146.1 - 34355 0.66 0.996531
Target:  5'- gGGCGCAccccccacccUCGCCGGgGCUccGGGa- -3'
miRNA:   3'- -UCGUGU----------AGUGGCCgUGA--UCCaa -5'
MIMAT0003432 rlcv-miR-rL1-5-5p -48.3 NC_006146.1 + 41207 0.66 0.995884
Target:  5'- aGGCGCcccaucCGCgGGCACUGGGc- -3'
miRNA:   3'- -UCGUGua----GUGgCCGUGAUCCaa -5'
MIMAT0003432 rlcv-miR-rL1-5-5p -48.3 NC_006146.1 - 111923 0.66 0.995141
Target:  5'- cAGCACGUCGUCGGa--UAGGUUg -3'
miRNA:   3'- -UCGUGUAGUGGCCgugAUCCAA- -5'
MIMAT0003432 rlcv-miR-rL1-5-5p -48.3 NC_006146.1 - 106870 0.66 0.995141
Target:  5'- aGGCACAUCugcgccuggGCCGGgGCgggAGGg- -3'
miRNA:   3'- -UCGUGUAG---------UGGCCgUGa--UCCaa -5'
MIMAT0003432 rlcv-miR-rL1-5-5p -48.3 NC_006146.1 + 63969 0.67 0.994292
Target:  5'- aAGCACAcUCAgCCGGCug-AGGUUc -3'
miRNA:   3'- -UCGUGU-AGU-GGCCGugaUCCAA- -5'
MIMAT0003432 rlcv-miR-rL1-5-5p -48.3 NC_006146.1 - 110381 0.67 0.994292
Target:  5'- gGGcCGCAUCuccaACCGGCGCUgAGGc- -3'
miRNA:   3'- -UC-GUGUAG----UGGCCGUGA-UCCaa -5'
MIMAT0003432 rlcv-miR-rL1-5-5p -48.3 NC_006146.1 - 138969 0.67 0.992237
Target:  5'- uGcCACGUCACCccggGGUGCUGGGg- -3'
miRNA:   3'- uC-GUGUAGUGG----CCGUGAUCCaa -5'
MIMAT0003432 rlcv-miR-rL1-5-5p -48.3 NC_006146.1 - 35139 0.67 0.992237
Target:  5'- uGcCACGUCACCccggGGUGCUGGGg- -3'
miRNA:   3'- uC-GUGUAGUGG----CCGUGAUCCaa -5'
MIMAT0003432 rlcv-miR-rL1-5-5p -48.3 NC_006146.1 + 99792 0.67 0.989779
Target:  5'- gGGCGCAggugucucggaagggCACCGGCGaggGGGUg -3'
miRNA:   3'- -UCGUGUa--------------GUGGCCGUga-UCCAa -5'
MIMAT0003432 rlcv-miR-rL1-5-5p -48.3 NC_006146.1 - 130112 0.68 0.9881
Target:  5'- uGGUGCcgCGCCGGCGCcccAGGg- -3'
miRNA:   3'- -UCGUGuaGUGGCCGUGa--UCCaa -5'
MIMAT0003432 rlcv-miR-rL1-5-5p -48.3 NC_006146.1 - 62879 0.68 0.98243
Target:  5'- cGCACG-CACCGcGCGCUuggcGGGUa -3'
miRNA:   3'- uCGUGUaGUGGC-CGUGA----UCCAa -5'
MIMAT0003432 rlcv-miR-rL1-5-5p -48.3 NC_006146.1 - 157045 0.68 0.980147
Target:  5'- aGGCGCAagCGCCGGCugGCUGcGGUc -3'
miRNA:   3'- -UCGUGUa-GUGGCCG--UGAU-CCAa -5'
MIMAT0003432 rlcv-miR-rL1-5-5p -48.3 NC_006146.1 + 44900 0.69 0.974931
Target:  5'- uGGUACcUUgacgGCCGGCGCUGGGa- -3'
miRNA:   3'- -UCGUGuAG----UGGCCGUGAUCCaa -5'
MIMAT0003432 rlcv-miR-rL1-5-5p -48.3 NC_006146.1 + 55824 0.69 0.971978
Target:  5'- aGGC-CGUC-CCGGC-CUGGGUg -3'
miRNA:   3'- -UCGuGUAGuGGCCGuGAUCCAa -5'
MIMAT0003432 rlcv-miR-rL1-5-5p -48.3 NC_006146.1 + 64662 0.69 0.968782
Target:  5'- gGGCACGUCGCC-GUGgUAGGUg -3'
miRNA:   3'- -UCGUGUAGUGGcCGUgAUCCAa -5'
MIMAT0003432 rlcv-miR-rL1-5-5p -48.3 NC_006146.1 + 121133 0.71 0.93899
Target:  5'- gAGaCACAUCAgCCGGCGuCUGGGc- -3'
miRNA:   3'- -UC-GUGUAGU-GGCCGU-GAUCCaa -5'
MIMAT0003432 rlcv-miR-rL1-5-5p -48.3 NC_006146.1 + 103663 0.72 0.909188
Target:  5'- uAGCGCAUgGCgGGCAuCUGGGg- -3'
miRNA:   3'- -UCGUGUAgUGgCCGU-GAUCCaa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.