miRNA display CGI


Results 1 - 20 of 30 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003446 rlcv-miR-rL1-15 -49.2 NC_006146.1 - 99117 0.66 0.99636
Target:  5'- cGACCucCGCCCAUcCUUUGgAGGAg -3'
miRNA:   3'- uUUGGu-GUGGGUAuGAGAUgUCCU- -5'
MIMAT0003446 rlcv-miR-rL1-15 -49.2 NC_006146.1 + 106053 0.66 0.99636
Target:  5'- cGAGCCcuucuGCACCUgaggcgGCUCUGCGGGu -3'
miRNA:   3'- -UUUGG-----UGUGGGua----UGAGAUGUCCu -5'
MIMAT0003446 rlcv-miR-rL1-15 -49.2 NC_006146.1 - 33934 0.66 0.996106
Target:  5'- cGGACCACACCCAccggaccggaggaGCUCcagaACGGGGg -3'
miRNA:   3'- -UUUGGUGUGGGUa------------UGAGa---UGUCCU- -5'
MIMAT0003446 rlcv-miR-rL1-15 -49.2 NC_006146.1 - 94306 0.66 0.995698
Target:  5'- --uCCugGCCCGgcucaUCUACGGGGg -3'
miRNA:   3'- uuuGGugUGGGUaug--AGAUGUCCU- -5'
MIMAT0003446 rlcv-miR-rL1-15 -49.2 NC_006146.1 + 82385 0.66 0.994941
Target:  5'- --uCCACACCCGgg--UUACAGGGa -3'
miRNA:   3'- uuuGGUGUGGGUaugaGAUGUCCU- -5'
MIMAT0003446 rlcv-miR-rL1-15 -49.2 NC_006146.1 - 97144 0.66 0.993104
Target:  5'- -cACCcugGCGCCCAgACUCgcggACGGGGa -3'
miRNA:   3'- uuUGG---UGUGGGUaUGAGa---UGUCCU- -5'
MIMAT0003446 rlcv-miR-rL1-15 -49.2 NC_006146.1 - 167983 0.67 0.990768
Target:  5'- -cGCCACGCCCAgcugucAUUCUccccgccaACGGGAg -3'
miRNA:   3'- uuUGGUGUGGGUa-----UGAGA--------UGUCCU- -5'
MIMAT0003446 rlcv-miR-rL1-15 -49.2 NC_006146.1 + 100741 0.67 0.990768
Target:  5'- -cACCACcucaccCCCAUGCUCUAUcuGGAg -3'
miRNA:   3'- uuUGGUGu-----GGGUAUGAGAUGu-CCU- -5'
MIMAT0003446 rlcv-miR-rL1-15 -49.2 NC_006146.1 - 168915 0.67 0.990768
Target:  5'- -cGCCACGCCCAgcugucAUUCUccccgccaACGGGAg -3'
miRNA:   3'- uuUGGUGUGGGUa-----UGAGA--------UGUCCU- -5'
MIMAT0003446 rlcv-miR-rL1-15 -49.2 NC_006146.1 - 169847 0.67 0.990768
Target:  5'- -cGCCACGCCCAgcugucAUUCUccccgccaACGGGAg -3'
miRNA:   3'- uuUGGUGUGGGUa-----UGAGA--------UGUCCU- -5'
MIMAT0003446 rlcv-miR-rL1-15 -49.2 NC_006146.1 + 8793 0.67 0.990768
Target:  5'- --cCCACAuCCCAUACUCcuggucaggUugGGGAg -3'
miRNA:   3'- uuuGGUGU-GGGUAUGAG---------AugUCCU- -5'
MIMAT0003446 rlcv-miR-rL1-15 -49.2 NC_006146.1 - 170778 0.67 0.990768
Target:  5'- -cGCCACGCCCAgcugucAUUCUcccggccaACGGGAg -3'
miRNA:   3'- uuUGGUGUGGGUa-----UGAGA--------UGUCCU- -5'
MIMAT0003446 rlcv-miR-rL1-15 -49.2 NC_006146.1 - 65312 0.67 0.989388
Target:  5'- -cACCaggGCACCCAggGCUCccagACGGGAa -3'
miRNA:   3'- uuUGG---UGUGGGUa-UGAGa---UGUCCU- -5'
MIMAT0003446 rlcv-miR-rL1-15 -49.2 NC_006146.1 - 34121 0.67 0.988792
Target:  5'- cGGACCGCACCCAccggaccggaggaGCUCcaggACGGGGg -3'
miRNA:   3'- -UUUGGUGUGGGUa------------UGAGa---UGUCCU- -5'
MIMAT0003446 rlcv-miR-rL1-15 -49.2 NC_006146.1 - 4372 0.67 0.987851
Target:  5'- -cGCCGaGCCCGU-CUCgggGCAGGAg -3'
miRNA:   3'- uuUGGUgUGGGUAuGAGa--UGUCCU- -5'
MIMAT0003446 rlcv-miR-rL1-15 -49.2 NC_006146.1 + 8730 0.67 0.986147
Target:  5'- gGGACCGuggauaGCCUAUGCuaUCUACAGGGu -3'
miRNA:   3'- -UUUGGUg-----UGGGUAUG--AGAUGUCCU- -5'
MIMAT0003446 rlcv-miR-rL1-15 -49.2 NC_006146.1 - 24890 0.68 0.984267
Target:  5'- aGGGCCuguaGCCCGUgACUCUGgAGGAc -3'
miRNA:   3'- -UUUGGug--UGGGUA-UGAGAUgUCCU- -5'
MIMAT0003446 rlcv-miR-rL1-15 -49.2 NC_006146.1 - 27968 0.68 0.984267
Target:  5'- aGGGCCuguaGCCCGUgACUCUGgAGGAc -3'
miRNA:   3'- -UUUGGug--UGGGUA-UGAGAUgUCCU- -5'
MIMAT0003446 rlcv-miR-rL1-15 -49.2 NC_006146.1 - 12577 0.68 0.984267
Target:  5'- aGGGCCuguaGCCCGUgACUCUGgAGGAc -3'
miRNA:   3'- -UUUGGug--UGGGUA-UGAGAUgUCCU- -5'
MIMAT0003446 rlcv-miR-rL1-15 -49.2 NC_006146.1 - 15656 0.68 0.984267
Target:  5'- aGGGCCuguaGCCCGUgACUCUGgAGGAc -3'
miRNA:   3'- -UUUGGug--UGGGUA-UGAGAUgUCCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.