miRNA display CGI


Results 1 - 20 of 148 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 59664 0.66 0.999242
Target:  5'- gGAGGGGAgGCagaucucagGGGCGUGCc- -3'
miRNA:   3'- aUUCCCCUgUGg--------UCCGUAUGuu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 35104 0.66 0.999242
Target:  5'- aGGGGGGcugACACCGGGCc----- -3'
miRNA:   3'- aUUCCCC---UGUGGUCCGuauguu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 63125 0.66 0.999056
Target:  5'- gGAGGGGGCAgCAgccccgcgauucGGCGuUGCAGa -3'
miRNA:   3'- aUUCCCCUGUgGU------------CCGU-AUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 81989 0.66 0.999056
Target:  5'- -cAGGGGGCACCcguGGCcccGUugAGg -3'
miRNA:   3'- auUCCCCUGUGGu--CCG---UAugUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 98380 0.66 0.999056
Target:  5'- aGAGGGGucGCAaaagcgggcCCAGGcCAUGCAc -3'
miRNA:   3'- aUUCCCC--UGU---------GGUCC-GUAUGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 117472 0.66 0.999056
Target:  5'- gAGGGaGGAgGCUAGGCGUcCGg -3'
miRNA:   3'- aUUCC-CCUgUGGUCCGUAuGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 166767 0.66 0.999056
Target:  5'- -cAGGGGugGCUAGGCcUGg-- -3'
miRNA:   3'- auUCCCCugUGGUCCGuAUguu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 38914 0.66 0.998832
Target:  5'- --cGGGGGCAgCGGGCGgcCGc -3'
miRNA:   3'- auuCCCCUGUgGUCCGUauGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 60571 0.66 0.998564
Target:  5'- -cGGcGGGugGCCAGGCccaACGAc -3'
miRNA:   3'- auUC-CCCugUGGUCCGua-UGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 60244 0.66 0.998564
Target:  5'- cUGAGGGccGGCACCAGGag-GCGc -3'
miRNA:   3'- -AUUCCC--CUGUGGUCCguaUGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 150546 0.66 0.998245
Target:  5'- gAGGGGGAauagcguCCAGGCAUcuuuCAGg -3'
miRNA:   3'- aUUCCCCUgu-----GGUCCGUAu---GUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 26088 0.66 0.998245
Target:  5'- cAGGGGGGCGgggauggcCCGGGUggACAGa -3'
miRNA:   3'- aUUCCCCUGU--------GGUCCGuaUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 28631 0.66 0.998245
Target:  5'- aGAGGGGACGCCuaGGGUc----- -3'
miRNA:   3'- aUUCCCCUGUGG--UCCGuauguu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 29156 0.66 0.998245
Target:  5'- cAGGGGGGCGgggauggcCCGGGUggACAGa -3'
miRNA:   3'- aUUCCCCUGU--------GGUCCGuaUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 25562 0.66 0.998245
Target:  5'- aGAGGGGACGCCuaGGGUc----- -3'
miRNA:   3'- aUUCCCCUGUGG--UCCGuauguu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 103546 0.66 0.998245
Target:  5'- -cGGGGGAgAUCAuGGCAUccgGCAAg -3'
miRNA:   3'- auUCCCCUgUGGU-CCGUA---UGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 23019 0.66 0.998245
Target:  5'- cAGGGGGGCGgggauggcCCGGGUggACAGa -3'
miRNA:   3'- aUUCCCCUGU--------GGUCCGuaUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 153927 0.66 0.998245
Target:  5'- gGAGGGGGC-CaGGGCcUGCAGg -3'
miRNA:   3'- aUUCCCCUGuGgUCCGuAUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 16355 0.66 0.998245
Target:  5'- aGAGGGGACGCCuaGGGUc----- -3'
miRNA:   3'- aUUCCCCUGUGG--UCCGuauguu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 13286 0.66 0.998245
Target:  5'- aGAGGGGACGCCuaGGGUc----- -3'
miRNA:   3'- aUUCCCCUGUGG--UCCGuauguu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.