miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10247 3' -46.3 NC_002686.1 + 44926 0.66 0.999915
Target:  5'- uGACAua-GGAGGgGCUAUUAuGGCCCc -3'
miRNA:   3'- uCUGUucaCUUCUgCGAUAGU-UUGGG- -5'
10247 3' -46.3 NC_002686.1 + 9930 0.66 0.999809
Target:  5'- cAGAUAAGUGAAGAUcCUGUguAugUa -3'
miRNA:   3'- -UCUGUUCACUUCUGcGAUAguUugGg -5'
10247 3' -46.3 NC_002686.1 + 49948 0.66 0.999809
Target:  5'- aAGGCAAGUaacAGuucaaauuCGCUAUCAAAUUCa -3'
miRNA:   3'- -UCUGUUCAcu-UCu-------GCGAUAGUUUGGG- -5'
10247 3' -46.3 NC_002686.1 + 120235 0.66 0.999754
Target:  5'- uGAUguAGGUGggGuuaGCGCUGUCAccucaauacgGugCCg -3'
miRNA:   3'- uCUG--UUCACuuC---UGCGAUAGU----------UugGG- -5'
10247 3' -46.3 NC_002686.1 + 107919 0.66 0.999754
Target:  5'- uGAUguAGGUGggGuuaGCGCUGUCAccucaauacgGugCCg -3'
miRNA:   3'- uCUG--UUCACuuC---UGCGAUAGU----------UugGG- -5'
10247 3' -46.3 NC_002686.1 + 82815 0.67 0.999636
Target:  5'- uAGACAAGcuUGAGGACGCaUggggggugauacuccGUUGGACCa -3'
miRNA:   3'- -UCUGUUC--ACUUCUGCG-A---------------UAGUUUGGg -5'
10247 3' -46.3 NC_002686.1 + 104956 0.68 0.999212
Target:  5'- uGAC-GGUGAAGGCGC-----AGCCCc -3'
miRNA:   3'- uCUGuUCACUUCUGCGauaguUUGGG- -5'
10247 3' -46.3 NC_002686.1 + 123199 0.68 0.999212
Target:  5'- uGAC-GGUGAAGGCGC-----AGCCCc -3'
miRNA:   3'- uCUGuUCACUUCUGCGauaguUUGGG- -5'
10247 3' -46.3 NC_002686.1 + 70327 0.68 0.999025
Target:  5'- cGGACAuGUGGuacGugGC-GUgGGACCCg -3'
miRNA:   3'- -UCUGUuCACUu--CugCGaUAgUUUGGG- -5'
10247 3' -46.3 NC_002686.1 + 6363 0.69 0.996351
Target:  5'- cGACGAGUG-AGACGCaUGUUuGGUCCa -3'
miRNA:   3'- uCUGUUCACuUCUGCG-AUAGuUUGGG- -5'
10247 3' -46.3 NC_002686.1 + 123134 0.7 0.994068
Target:  5'- gAGACcgcGGUGGAGAUGggggAUgGAACCCg -3'
miRNA:   3'- -UCUGu--UCACUUCUGCga--UAgUUUGGG- -5'
10247 3' -46.3 NC_002686.1 + 105021 0.7 0.994068
Target:  5'- gAGACcgcGGUGGAGAUGggggAUgGAACCCg -3'
miRNA:   3'- -UCUGu--UCACUUCUGCga--UAgUUUGGG- -5'
10247 3' -46.3 NC_002686.1 + 121406 0.72 0.982186
Target:  5'- uGGCAcGUGGAGAgGCUcugUggGCCCu -3'
miRNA:   3'- uCUGUuCACUUCUgCGAua-GuuUGGG- -5'
10247 3' -46.3 NC_002686.1 + 106749 0.72 0.982186
Target:  5'- uGGCAcGUGGAGAgGCUcugUggGCCCu -3'
miRNA:   3'- uCUGUuCACUUCUgCGAua-GuuUGGG- -5'
10247 3' -46.3 NC_002686.1 + 5437 0.73 0.971839
Target:  5'- cAGACGuauGUGAAGAUGCUgAUCGuguguacacgcAGCCUa -3'
miRNA:   3'- -UCUGUu--CACUUCUGCGA-UAGU-----------UUGGG- -5'
10247 3' -46.3 NC_002686.1 + 120368 1.13 0.012202
Target:  5'- aAGACAAGUGAAGACGCUAUCAAACCCc -3'
miRNA:   3'- -UCUGUUCACUUCUGCGAUAGUUUGGG- -5'
10247 3' -46.3 NC_002686.1 + 107787 1.13 0.012202
Target:  5'- aAGACAAGUGAAGACGCUAUCAAACCCc -3'
miRNA:   3'- -UCUGUUCACUUCUGCGAUAGUUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.