miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10299 3' -53.4 NC_002687.1 + 203701 0.66 0.996076
Target:  5'- aGAagaGUCgaacggCAGGAGAaGAgcuucuucGUUGGCCAc -3'
miRNA:   3'- aCUg--CAGa-----GUCCUCUaCU--------CAACCGGU- -5'
10299 3' -53.4 NC_002687.1 + 325454 0.66 0.994746
Target:  5'- uUGugGUCg-AGGAGGggaccacagGAGUgucGGCCAc -3'
miRNA:   3'- -ACugCAGagUCCUCUa--------CUCAa--CCGGU- -5'
10299 3' -53.4 NC_002687.1 + 171726 0.66 0.993956
Target:  5'- aUGugGUUaCGGuGAcGAUGAGUUGGaCCc -3'
miRNA:   3'- -ACugCAGaGUC-CU-CUACUCAACC-GGu -5'
10299 3' -53.4 NC_002687.1 + 142522 0.66 0.993701
Target:  5'- gGACGUCUC-GGAGAUGuaccucagccuGUcgucgucguccucgUGGCCu -3'
miRNA:   3'- aCUGCAGAGuCCUCUACu----------CA--------------ACCGGu -5'
10299 3' -53.4 NC_002687.1 + 245185 0.67 0.989791
Target:  5'- cGuCGUCaUCAGGAGAcucGAGcagGGCCu -3'
miRNA:   3'- aCuGCAG-AGUCCUCUa--CUCaa-CCGGu -5'
10299 3' -53.4 NC_002687.1 + 2959 0.67 0.989791
Target:  5'- cGAUGUCg-AGaGGAUGGGUUGGaCCGa -3'
miRNA:   3'- aCUGCAGagUCcUCUACUCAACC-GGU- -5'
10299 3' -53.4 NC_002687.1 + 130477 0.67 0.989791
Target:  5'- aUGAUGccuuUCUCGuucGGUGGGUUGGCCAu -3'
miRNA:   3'- -ACUGC----AGAGUccuCUACUCAACCGGU- -5'
10299 3' -53.4 NC_002687.1 + 320730 0.67 0.989791
Target:  5'- cGuCGUCaUCAGGAGAcucGAGcagGGCCu -3'
miRNA:   3'- aCuGCAG-AGUCCUCUa--CUCaa-CCGGu -5'
10299 3' -53.4 NC_002687.1 + 267878 0.69 0.972497
Target:  5'- aGGuCGgugCUCAGGAGGUGc-UUGGCCc -3'
miRNA:   3'- aCU-GCa--GAGUCCUCUACucAACCGGu -5'
10299 3' -53.4 NC_002687.1 + 270647 0.69 0.963601
Target:  5'- uUGAUGUgcaagucggugCUCAGGAGGUGc-UUGGCCc -3'
miRNA:   3'- -ACUGCA-----------GAGUCCUCUACucAACCGGu -5'
10299 3' -53.4 NC_002687.1 + 280528 0.73 0.854609
Target:  5'- gGAUGUCUCGGGA-AUG-GUUGGCgCAa -3'
miRNA:   3'- aCUGCAGAGUCCUcUACuCAACCG-GU- -5'
10299 3' -53.4 NC_002687.1 + 309035 0.73 0.836666
Target:  5'- cGACGUC-CAGGGGAucagagcuuugaagUGAGccUGGCCGu -3'
miRNA:   3'- aCUGCAGaGUCCUCU--------------ACUCa-ACCGGU- -5'
10299 3' -53.4 NC_002687.1 + 247348 0.98 0.052724
Target:  5'- cUGACcUCUCAGGAGAUGAGUUGGCCAc -3'
miRNA:   3'- -ACUGcAGAGUCCUCUACUCAACCGGU- -5'
10299 3' -53.4 NC_002687.1 + 318567 1.08 0.011515
Target:  5'- cUGACGUCUCAGGAGAUGAGUUGGCCAc -3'
miRNA:   3'- -ACUGCAGAGUCCUCUACUCAACCGGU- -5'
10299 3' -53.4 NC_002687.1 + 40713 1.08 0.011515
Target:  5'- cUGACGUCUCAGGAGAUGAGUUGGCCAc -3'
miRNA:   3'- -ACUGCAGAGUCCUCUACUCAACCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.