miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1058 5' -55.9 NC_000929.1 + 17320 1.09 0.000447
Target:  5'- cUGACCAGCACAUCCGCCCGGUCAUUCu -3'
miRNA:   3'- -ACUGGUCGUGUAGGCGGGCCAGUAAG- -5'
1058 5' -55.9 NC_000929.1 + 8682 0.73 0.211034
Target:  5'- -uGCCGGUcaGUCCGUCCGGUCGUg- -3'
miRNA:   3'- acUGGUCGugUAGGCGGGCCAGUAag -5'
1058 5' -55.9 NC_000929.1 + 16222 0.71 0.290661
Target:  5'- gGGCguGCGCGUCUGCCa-GUUGUUCg -3'
miRNA:   3'- aCUGguCGUGUAGGCGGgcCAGUAAG- -5'
1058 5' -55.9 NC_000929.1 + 25149 0.7 0.321994
Target:  5'- -uGCCAGCGCAUCUuuaCCCGGUU--UCa -3'
miRNA:   3'- acUGGUCGUGUAGGc--GGGCCAGuaAG- -5'
1058 5' -55.9 NC_000929.1 + 27158 0.69 0.347106
Target:  5'- cUGGCUGGCAgCuUCUGCCCGGUaugUCu -3'
miRNA:   3'- -ACUGGUCGU-GuAGGCGGGCCAguaAG- -5'
1058 5' -55.9 NC_000929.1 + 12742 0.69 0.373588
Target:  5'- -cACCGGCGCGagaaagaaaUCCGCCaGG-CAUUCg -3'
miRNA:   3'- acUGGUCGUGU---------AGGCGGgCCaGUAAG- -5'
1058 5' -55.9 NC_000929.1 + 11588 0.69 0.373588
Target:  5'- cGAgCAGCAgcgcCA-CCGCCCGGuucuggucuUCGUUCa -3'
miRNA:   3'- aCUgGUCGU----GUaGGCGGGCC---------AGUAAG- -5'
1058 5' -55.9 NC_000929.1 + 30613 0.69 0.382715
Target:  5'- aUGACCGGCGauauaAUCCGCCacg-CGUUCc -3'
miRNA:   3'- -ACUGGUCGUg----UAGGCGGgccaGUAAG- -5'
1058 5' -55.9 NC_000929.1 + 28149 0.67 0.470126
Target:  5'- aUGACCAGCAaugCCGCCggagagcUGG-UAUUCa -3'
miRNA:   3'- -ACUGGUCGUguaGGCGG-------GCCaGUAAG- -5'
1058 5' -55.9 NC_000929.1 + 21855 0.66 0.513681
Target:  5'- aGGCCAGUGCGg-CGUuuGGUCAg-- -3'
miRNA:   3'- aCUGGUCGUGUagGCGggCCAGUaag -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.