miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1060 5' -58.5 NC_000929.1 + 28239 0.67 0.401941
Target:  5'- -uGGCUGU-GCUGGCAGCcCGGCu-- -3'
miRNA:   3'- cuUCGGCAuUGGCCGUCGuGCCGccc -5'
1060 5' -58.5 NC_000929.1 + 14169 0.67 0.401017
Target:  5'- --cGCCGUuACCGGUGGCAucaaaugcagcgcCGGUaaaacGGGg -3'
miRNA:   3'- cuuCGGCAuUGGCCGUCGU-------------GCCG-----CCC- -5'
1060 5' -58.5 NC_000929.1 + 24955 0.67 0.374814
Target:  5'- --cGCCGggugcuUAACUGGCAcGaCAUGGCGGa -3'
miRNA:   3'- cuuCGGC------AUUGGCCGU-C-GUGCCGCCc -5'
1060 5' -58.5 NC_000929.1 + 25597 0.7 0.25854
Target:  5'- cAGGCCGUGccguuACCGGUAcGC-CGGgUGGGg -3'
miRNA:   3'- cUUCGGCAU-----UGGCCGU-CGuGCC-GCCC- -5'
1060 5' -58.5 NC_000929.1 + 26745 0.74 0.140644
Target:  5'- gGAAGCUGUAACCGGUgucaucgaugauaucAGUgauGCGGUGGa -3'
miRNA:   3'- -CUUCGGCAUUGGCCG---------------UCG---UGCCGCCc -5'
1060 5' -58.5 NC_000929.1 + 25527 0.74 0.120891
Target:  5'- -cGGCUGUGGcCCGGaCAGCAauaacggcUGGCGGGg -3'
miRNA:   3'- cuUCGGCAUU-GGCC-GUCGU--------GCCGCCC- -5'
1060 5' -58.5 NC_000929.1 + 22980 0.74 0.120891
Target:  5'- -cGGCC-UGACCGGUGGCAaaGCGGGu -3'
miRNA:   3'- cuUCGGcAUUGGCCGUCGUgcCGCCC- -5'
1060 5' -58.5 NC_000929.1 + 19820 1.09 0.00027
Target:  5'- aGAAGCCGUAACCGGCAGCACGGCGGGu -3'
miRNA:   3'- -CUUCGGCAUUGGCCGUCGUGCCGCCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.