miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10702 3' -53.3 NC_002794.1 + 191773 1.06 0.011582
Target:  5'- gAAUCGUCCGCGACGCUCGAACGUUCGc -3'
miRNA:   3'- -UUAGCAGGCGCUGCGAGCUUGCAAGC- -5'
10702 3' -53.3 NC_002794.1 + 44381 0.83 0.301031
Target:  5'- --aCGUCCGCGACGCUCGAcgcgccCGUUCc -3'
miRNA:   3'- uuaGCAGGCGCUGCGAGCUu-----GCAAGc -5'
10702 3' -53.3 NC_002794.1 + 101634 0.77 0.579772
Target:  5'- -uUCGUCCGCGAgCGUgggCGGGCGggCGg -3'
miRNA:   3'- uuAGCAGGCGCU-GCGa--GCUUGCaaGC- -5'
10702 3' -53.3 NC_002794.1 + 152631 0.76 0.640578
Target:  5'- -cUCGUCCuggGCGGCGUUCGAGCGgcgagacgUCGu -3'
miRNA:   3'- uuAGCAGG---CGCUGCGAGCUUGCa-------AGC- -5'
10702 3' -53.3 NC_002794.1 + 63510 0.74 0.750086
Target:  5'- cGUCGUCCGCGACGCcucccgcgCGAGCcgccUCGc -3'
miRNA:   3'- uUAGCAGGCGCUGCGa-------GCUUGca--AGC- -5'
10702 3' -53.3 NC_002794.1 + 81021 0.72 0.814087
Target:  5'- cAUCGUCCGC-ACGCUCGuGCGg--- -3'
miRNA:   3'- uUAGCAGGCGcUGCGAGCuUGCaagc -5'
10702 3' -53.3 NC_002794.1 + 51105 0.72 0.847266
Target:  5'- --aCGaCCGCGccucGCGCUCGGACG-UCGa -3'
miRNA:   3'- uuaGCaGGCGC----UGCGAGCUUGCaAGC- -5'
10702 3' -53.3 NC_002794.1 + 136560 0.71 0.877373
Target:  5'- -cUCGUCuCGCaGGUGCUCGGGCGUcUCGa -3'
miRNA:   3'- uuAGCAG-GCG-CUGCGAGCUUGCA-AGC- -5'
10702 3' -53.3 NC_002794.1 + 145784 0.7 0.904039
Target:  5'- gAGUCGUCCcCGGCcgGCUCGGACGa--- -3'
miRNA:   3'- -UUAGCAGGcGCUG--CGAGCUUGCaagc -5'
10702 3' -53.3 NC_002794.1 + 30383 0.7 0.910137
Target:  5'- cGAUCGUcauggccgcCCGCGACGUgaugccguggUCGAACG-UCGu -3'
miRNA:   3'- -UUAGCA---------GGCGCUGCG----------AGCUUGCaAGC- -5'
10702 3' -53.3 NC_002794.1 + 12171 0.69 0.925434
Target:  5'- gGAUCGUcgccgccgacgccgCCGCGGCcgggcgccGCUCGGACGUgccggCGg -3'
miRNA:   3'- -UUAGCA--------------GGCGCUG--------CGAGCUUGCAa----GC- -5'
10702 3' -53.3 NC_002794.1 + 134123 0.69 0.932187
Target:  5'- --cCGUCCGaCGGCGCggCGAGCGcggaagcUCGg -3'
miRNA:   3'- uuaGCAGGC-GCUGCGa-GCUUGCa------AGC- -5'
10702 3' -53.3 NC_002794.1 + 59220 0.69 0.937111
Target:  5'- -cUCGgCCGCGGCGCgCGAGCucUUCGc -3'
miRNA:   3'- uuAGCaGGCGCUGCGaGCUUGc-AAGC- -5'
10702 3' -53.3 NC_002794.1 + 61881 0.69 0.946256
Target:  5'- cGUCGUCgGCGcCGCgcggCGAGCGcggCGa -3'
miRNA:   3'- uUAGCAGgCGCuGCGa---GCUUGCaa-GC- -5'
10702 3' -53.3 NC_002794.1 + 12245 0.69 0.946256
Target:  5'- --cCGUCCGCGGCGC-CGAucCGgaaCGa -3'
miRNA:   3'- uuaGCAGGCGCUGCGaGCUu-GCaa-GC- -5'
10702 3' -53.3 NC_002794.1 + 100386 0.68 0.950482
Target:  5'- --aCGUCCGCGGCGUggaCG-ACGUggCGu -3'
miRNA:   3'- uuaGCAGGCGCUGCGa--GCuUGCAa-GC- -5'
10702 3' -53.3 NC_002794.1 + 88689 0.68 0.950482
Target:  5'- cGUCGcUCCGCGAUaCUCGAcCG-UCGg -3'
miRNA:   3'- uUAGC-AGGCGCUGcGAGCUuGCaAGC- -5'
10702 3' -53.3 NC_002794.1 + 179109 0.68 0.95448
Target:  5'- cGGUCGUCCGCGguccggGCGCgCGGuCGgUCGa -3'
miRNA:   3'- -UUAGCAGGCGC------UGCGaGCUuGCaAGC- -5'
10702 3' -53.3 NC_002794.1 + 107796 0.68 0.95448
Target:  5'- --gCGUCCGCG-CGCauugCGAACGccUCGc -3'
miRNA:   3'- uuaGCAGGCGCuGCGa---GCUUGCa-AGC- -5'
10702 3' -53.3 NC_002794.1 + 68906 0.68 0.958254
Target:  5'- cGAUCGcgUCGCGGgGCUCGcGGCGUccUCGu -3'
miRNA:   3'- -UUAGCa-GGCGCUgCGAGC-UUGCA--AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.