miRNA display CGI


Results 21 - 40 of 539 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10710 5' -66.9 NC_002794.1 + 78011 0.66 0.529836
Target:  5'- gGCGgCgGcGCCGUCGGgagaacgccCGCcGCCGCCCu -3'
miRNA:   3'- -CGCaGgU-CGGCGGCC---------GCGcCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 49600 0.66 0.529836
Target:  5'- cGCGaUCGGCgacggcgggCGCCGGCgGCGcCuCGCCCg -3'
miRNA:   3'- -CGCaGGUCG---------GCGGCCG-CGCcG-GCGGG- -5'
10710 5' -66.9 NC_002794.1 + 156190 0.66 0.529836
Target:  5'- cGCGUCaucggAGUCGCCGGuCGgagGGCCGgCg -3'
miRNA:   3'- -CGCAGg----UCGGCGGCC-GCg--CCGGCgGg -5'
10710 5' -66.9 NC_002794.1 + 187940 0.66 0.529836
Target:  5'- cGCGUCacgcguGCgCGCgCGaGCGCgggaccucgggaGGCCGCUCa -3'
miRNA:   3'- -CGCAGgu----CG-GCG-GC-CGCG------------CCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 67835 0.66 0.529836
Target:  5'- cCGgCCcGCCGucgcCCGGCGCcGCCGCgCg -3'
miRNA:   3'- cGCaGGuCGGC----GGCCGCGcCGGCGgG- -5'
10710 5' -66.9 NC_002794.1 + 141448 0.66 0.529836
Target:  5'- gGCG-CCGGgaG-CGGCGCGG-CGUCCg -3'
miRNA:   3'- -CGCaGGUCggCgGCCGCGCCgGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 148136 0.66 0.529836
Target:  5'- cGCGg--GGCCGCCGGggcgaggGCGGUCGCg- -3'
miRNA:   3'- -CGCaggUCGGCGGCCg------CGCCGGCGgg -5'
10710 5' -66.9 NC_002794.1 + 14571 0.66 0.529836
Target:  5'- gGCGagCCGGCCGaCCGaaGCG-GGCCGUg- -3'
miRNA:   3'- -CGCa-GGUCGGC-GGC--CGCgCCGGCGgg -5'
10710 5' -66.9 NC_002794.1 + 148198 0.66 0.529836
Target:  5'- gGUcUCCGG-CGCCGGCGCG--CGCUCg -3'
miRNA:   3'- -CGcAGGUCgGCGGCCGCGCcgGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 184830 0.66 0.527149
Target:  5'- cGCGUCCGGgcgcaCCgcgcagcgauacguGCCGGa-CGGCCGUUCg -3'
miRNA:   3'- -CGCAGGUC-----GG--------------CGGCCgcGCCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 194815 0.66 0.520902
Target:  5'- ---aCCAGCCGCagcgacGCGCGcucGCgGCCCg -3'
miRNA:   3'- cgcaGGUCGGCGgc----CGCGC---CGgCGGG- -5'
10710 5' -66.9 NC_002794.1 + 14144 0.66 0.520902
Target:  5'- cCGUCCGGuCCGUCGucgaGCcccGCCGCCUg -3'
miRNA:   3'- cGCAGGUC-GGCGGCcg--CGc--CGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 85471 0.66 0.520902
Target:  5'- gGCGcCCGGCCuCCGGC-CuGUCGUCUg -3'
miRNA:   3'- -CGCaGGUCGGcGGCCGcGcCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 140510 0.66 0.520902
Target:  5'- cGCGacuUCCA-CCGCUGGCGgcaGGCC-CUCg -3'
miRNA:   3'- -CGC---AGGUcGGCGGCCGCg--CCGGcGGG- -5'
10710 5' -66.9 NC_002794.1 + 102411 0.66 0.520902
Target:  5'- cGCGaCgCGGCCG-UGGCcgaGGCCGCCa -3'
miRNA:   3'- -CGCaG-GUCGGCgGCCGcg-CCGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 92717 0.66 0.520902
Target:  5'- cGUGUCgAGCCuGUC-GCGCuGGCUGCUg -3'
miRNA:   3'- -CGCAGgUCGG-CGGcCGCG-CCGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 193965 0.66 0.520902
Target:  5'- cCG-CCA-CCGCCGucaccgcCGCGGCCGCUa -3'
miRNA:   3'- cGCaGGUcGGCGGCc------GCGCCGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 121472 0.66 0.520902
Target:  5'- cCGUCgAGacgaCCGCCGGUucggacGCGGCCuccGCCg -3'
miRNA:   3'- cGCAGgUC----GGCGGCCG------CGCCGG---CGGg -5'
10710 5' -66.9 NC_002794.1 + 143679 0.66 0.520902
Target:  5'- cGCGUCaggAGCUGCCgcagGGuCGC-GuuGCCCa -3'
miRNA:   3'- -CGCAGg--UCGGCGG----CC-GCGcCggCGGG- -5'
10710 5' -66.9 NC_002794.1 + 18604 0.66 0.520902
Target:  5'- aCGUCUAcCuCGaCGGCacCGGCCGCCCc -3'
miRNA:   3'- cGCAGGUcG-GCgGCCGc-GCCGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.