miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10714 3' -57.9 NC_002794.1 + 194067 0.66 0.870667
Target:  5'- aGAGCGCC-GC-CUUCgucgCCGCCaCCGc -3'
miRNA:   3'- -CUCGUGGuCGcGAAGaa--GGCGGaGGU- -5'
10714 3' -57.9 NC_002794.1 + 82878 0.66 0.870667
Target:  5'- -cGCgACCGuGCGCgccUCgcgUCCGCCUCg- -3'
miRNA:   3'- cuCG-UGGU-CGCGa--AGa--AGGCGGAGgu -5'
10714 3' -57.9 NC_002794.1 + 56517 0.66 0.870667
Target:  5'- cGGGCGcuCCGGCGCUcguUCcggUCGCCaUCCGg -3'
miRNA:   3'- -CUCGU--GGUCGCGA---AGaa-GGCGG-AGGU- -5'
10714 3' -57.9 NC_002794.1 + 99698 0.66 0.870667
Target:  5'- -cGCGCUGGCGCcgcggaugUUCUUUCGCgaCCGg -3'
miRNA:   3'- cuCGUGGUCGCG--------AAGAAGGCGgaGGU- -5'
10714 3' -57.9 NC_002794.1 + 86699 0.66 0.870667
Target:  5'- cGAGC-CCGGuCGCUcgUCgaagCCGCCcggCCAc -3'
miRNA:   3'- -CUCGuGGUC-GCGA--AGaa--GGCGGa--GGU- -5'
10714 3' -57.9 NC_002794.1 + 150491 0.66 0.870667
Target:  5'- -uGCACCuGCgGCg----CCGCCUCCu -3'
miRNA:   3'- cuCGUGGuCG-CGaagaaGGCGGAGGu -5'
10714 3' -57.9 NC_002794.1 + 152556 0.66 0.870667
Target:  5'- aGAGUGCCaggagcGGCGCUUCa-CCGCCgcggcggCCGc -3'
miRNA:   3'- -CUCGUGG------UCGCGAAGaaGGCGGa------GGU- -5'
10714 3' -57.9 NC_002794.1 + 137434 0.66 0.863318
Target:  5'- -cGCGCCGGCGCUcuggaacgacUCggcggaaUCCGCCgugUCGg -3'
miRNA:   3'- cuCGUGGUCGCGA----------AGa------AGGCGGa--GGU- -5'
10714 3' -57.9 NC_002794.1 + 58393 0.66 0.861074
Target:  5'- cGGGCGCCAGCuGCUggagcacgccaaggUgCggCCGCCgCCAg -3'
miRNA:   3'- -CUCGUGGUCG-CGA--------------A-GaaGGCGGaGGU- -5'
10714 3' -57.9 NC_002794.1 + 67418 0.66 0.855768
Target:  5'- cGGCGCCAGCGUcggcggcgugUCgcgCCGCUUCgGg -3'
miRNA:   3'- cUCGUGGUCGCGa---------AGaa-GGCGGAGgU- -5'
10714 3' -57.9 NC_002794.1 + 43002 0.66 0.855768
Target:  5'- aGGCACCGGUccgaguagcuccGCaggUCgUCgGCCUCCAu -3'
miRNA:   3'- cUCGUGGUCG------------CGa--AGaAGgCGGAGGU- -5'
10714 3' -57.9 NC_002794.1 + 115758 0.66 0.855768
Target:  5'- cGGCGCgauCGGCGCUcgaaggacUCgaUCGCCUCCGu -3'
miRNA:   3'- cUCGUG---GUCGCGA--------AGaaGGCGGAGGU- -5'
10714 3' -57.9 NC_002794.1 + 185257 0.66 0.848021
Target:  5'- aAGCGCCAGCGgacg--CCGCCggCCGa -3'
miRNA:   3'- cUCGUGGUCGCgaagaaGGCGGa-GGU- -5'
10714 3' -57.9 NC_002794.1 + 49271 0.66 0.848021
Target:  5'- cGGGCGCUccaacggcccgGGCGCcg---CCGCCUCCc -3'
miRNA:   3'- -CUCGUGG-----------UCGCGaagaaGGCGGAGGu -5'
10714 3' -57.9 NC_002794.1 + 84297 0.66 0.844869
Target:  5'- gGAGCGgCGGCGCUUCcuggcgaccgggCCGCCcgagagCCGc -3'
miRNA:   3'- -CUCGUgGUCGCGAAGaa----------GGCGGa-----GGU- -5'
10714 3' -57.9 NC_002794.1 + 116146 0.66 0.840084
Target:  5'- cGGCgGCCAGgGCcugcaCCGCCUCCGu -3'
miRNA:   3'- cUCG-UGGUCgCGaagaaGGCGGAGGU- -5'
10714 3' -57.9 NC_002794.1 + 194026 0.67 0.823668
Target:  5'- -cGcCGCCGGCGCcUCgcCCGCCgCCGc -3'
miRNA:   3'- cuC-GUGGUCGCGaAGaaGGCGGaGGU- -5'
10714 3' -57.9 NC_002794.1 + 182984 0.67 0.823668
Target:  5'- cGAGCcgacgGCCGGCGCUUCgccgcgggCGCC-CCGc -3'
miRNA:   3'- -CUCG-----UGGUCGCGAAGaag-----GCGGaGGU- -5'
10714 3' -57.9 NC_002794.1 + 128845 0.67 0.815203
Target:  5'- uGAGCGCCGGCGUcgaCgacgCCGCUgccgCCGu -3'
miRNA:   3'- -CUCGUGGUCGCGaa-Gaa--GGCGGa---GGU- -5'
10714 3' -57.9 NC_002794.1 + 60963 0.67 0.815203
Target:  5'- cGAGCGCCGG-GCcuacgCgCGCCUCCGg -3'
miRNA:   3'- -CUCGUGGUCgCGaagaaG-GCGGAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.