miRNA display CGI


Results 1 - 4 of 4 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11171 3' -56.9 NC_002815.2 + 2664 0.74 0.027429
Target:  5'- aCUGGGUACGCaaacugccACAAGCCCAuCCu -3'
miRNA:   3'- cGACCCGUGCGguc-----UGUUCGGGUuGG- -5'
11171 3' -56.9 NC_002815.2 + 4866 1.14 0.00001
Target:  5'- cGCUGGGCACGCCAGACAAGCCCAACCu -3'
miRNA:   3'- -CGACCCGUGCGGUCUGUUCGGGUUGG- -5'
11171 3' -56.9 NC_002815.2 + 4897 0.73 0.033713
Target:  5'- gGUUGGGCuuGUCuGGCGuGCCCAGCg -3'
miRNA:   3'- -CGACCCGugCGGuCUGUuCGGGUUGg -5'
11171 3' -56.9 NC_002815.2 + 5656 0.68 0.093129
Target:  5'- uGCUGGGUcuuGCaGUCAuuGCGGGUCUAACCa -3'
miRNA:   3'- -CGACCCG---UG-CGGUc-UGUUCGGGUUGG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.