Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11198 | 5' | -52.7 | NC_002816.1 | + | 7322 | 0.72 | 0.707814 |
Target: 5'- --aGUACGCc--GCCAC-CACACCGUu -3' miRNA: 3'- cuaCAUGCGaaaCGGUGcGUGUGGCA- -5' |
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11198 | 5' | -52.7 | NC_002816.1 | + | 22165 | 0.72 | 0.707814 |
Target: 5'- --cGUACGCccgGUCACGUACGCCa- -3' miRNA: 3'- cuaCAUGCGaaaCGGUGCGUGUGGca -5' |
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11198 | 5' | -52.7 | NC_002816.1 | + | 29503 | 0.67 | 0.927345 |
Target: 5'- gGAUGUggACGUg--GCCACGCGuaaaguggucguCGCCGa -3' miRNA: 3'- -CUACA--UGCGaaaCGGUGCGU------------GUGGCa -5' |
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11198 | 5' | -52.7 | NC_002816.1 | + | 34186 | 0.68 | 0.894312 |
Target: 5'- uGGUGUACGCcaaauacgacggugUgcacUGCUACGCcguCACCGUg -3' miRNA: 3'- -CUACAUGCG--------------Aa---ACGGUGCGu--GUGGCA- -5' |
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11198 | 5' | -52.7 | NC_002816.1 | + | 39622 | 0.68 | 0.889412 |
Target: 5'- uGUGUcaaaguUGCUgUGCCA-GCGCACCGUg -3' miRNA: 3'- cUACAu-----GCGAaACGGUgCGUGUGGCA- -5' |
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11198 | 5' | -52.7 | NC_002816.1 | + | 77651 | 1.07 | 0.005471 |
Target: 5'- cGAUGUACGCUUUGCCACGCACACCGUc -3' miRNA: 3'- -CUACAUGCGAAACGGUGCGUGUGGCA- -5' |
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11198 | 5' | -52.7 | NC_002816.1 | + | 77798 | 0.73 | 0.665515 |
Target: 5'- cGGUGUGCGUg--GCaaaGCGUACAUCGUg -3' miRNA: 3'- -CUACAUGCGaaaCGg--UGCGUGUGGCA- -5' |
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11198 | 5' | -52.7 | NC_002816.1 | + | 100618 | 0.7 | 0.797851 |
Target: 5'- uGAUGgcuCGCUcgGCCAC-CACACCa- -3' miRNA: 3'- -CUACau-GCGAaaCGGUGcGUGUGGca -5' |
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11198 | 5' | -52.7 | NC_002816.1 | + | 107097 | 0.68 | 0.896374 |
Target: 5'- cAUGU-CGCUaaacUUGaCCAUGUACACCGc -3' miRNA: 3'- cUACAuGCGA----AAC-GGUGCGUGUGGCa -5' |
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11198 | 5' | -52.7 | NC_002816.1 | + | 117908 | 0.72 | 0.718239 |
Target: 5'- --cGUACGCUUcGUCGCGCGCAuguUCGUc -3' miRNA: 3'- cuaCAUGCGAAaCGGUGCGUGU---GGCA- -5' |
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11198 | 5' | -52.7 | NC_002816.1 | + | 120571 | 0.71 | 0.778727 |
Target: 5'- gGGUGUGCagucuGCUUUgGCCAUGUccaGCACCGg -3' miRNA: 3'- -CUACAUG-----CGAAA-CGGUGCG---UGUGGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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