miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11366 5' -57.1 NC_003084.1 + 26376 0.66 0.80696
Target:  5'- --uACCGCaACGGGacauuUGGugCGAUGcCa -3'
miRNA:   3'- aguUGGCG-UGCCCg----ACCugGCUACuG- -5'
11366 5' -57.1 NC_003084.1 + 59615 0.66 0.767007
Target:  5'- -gGACUGCAC-GGUUGGGCUGcagauacagggcuuGUGACa -3'
miRNA:   3'- agUUGGCGUGcCCGACCUGGC--------------UACUG- -5'
11366 5' -57.1 NC_003084.1 + 104352 0.67 0.750539
Target:  5'- gUUGGCC-CACGGGCUGGGCUcucuUGGu -3'
miRNA:   3'- -AGUUGGcGUGCCCGACCUGGcu--ACUg -5'
11366 5' -57.1 NC_003084.1 + 57126 0.67 0.714701
Target:  5'- uUCGGCCGUGCugacguacgcgcuccGGGCaaacgucuuUGGAUCGGUGAa -3'
miRNA:   3'- -AGUUGGCGUG---------------CCCG---------ACCUGGCUACUg -5'
11366 5' -57.1 NC_003084.1 + 65284 0.68 0.659316
Target:  5'- gCAAUUGCACGcuUUGGugCGAUGGCc -3'
miRNA:   3'- aGUUGGCGUGCccGACCugGCUACUG- -5'
11366 5' -57.1 NC_003084.1 + 7565 0.69 0.62817
Target:  5'- cUUGAUCGaCugGGGCUGGACuCGGcguacgGGCg -3'
miRNA:   3'- -AGUUGGC-GugCCCGACCUG-GCUa-----CUG- -5'
11366 5' -57.1 NC_003084.1 + 45853 0.69 0.607407
Target:  5'- uUCuGCgGCuuGGGCUGGACCcggGGCu -3'
miRNA:   3'- -AGuUGgCGugCCCGACCUGGcuaCUG- -5'
11366 5' -57.1 NC_003084.1 + 107700 0.7 0.576424
Target:  5'- aUCGAUCcgaGCACGGGCgagccgUGGA-CGGUGGCa -3'
miRNA:   3'- -AGUUGG---CGUGCCCG------ACCUgGCUACUG- -5'
11366 5' -57.1 NC_003084.1 + 37107 0.7 0.535714
Target:  5'- uUCGACCGCucACGGcGCUGGaACUGA-GAg -3'
miRNA:   3'- -AGUUGGCG--UGCC-CGACC-UGGCUaCUg -5'
11366 5' -57.1 NC_003084.1 + 35431 0.72 0.427424
Target:  5'- cUCAACUGgGCGGGCgaaauauuuuacggUGGAuugcagcacgaCCGGUGACa -3'
miRNA:   3'- -AGUUGGCgUGCCCG--------------ACCU-----------GGCUACUG- -5'
11366 5' -57.1 NC_003084.1 + 27674 0.75 0.307982
Target:  5'- aUCAGCCGC-CGGGU---GCCGAUGAUg -3'
miRNA:   3'- -AGUUGGCGuGCCCGaccUGGCUACUG- -5'
11366 5' -57.1 NC_003084.1 + 17616 1.09 0.001535
Target:  5'- aUCAACCGCACGGGCUGGACCGAUGACc -3'
miRNA:   3'- -AGUUGGCGUGCCCGACCUGGCUACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.