miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11369 5' -51.1 NC_003084.1 + 51762 0.66 0.979401
Target:  5'- uUGG-GGuuGAAGUUgGCCACGACGu-- -3'
miRNA:   3'- -ACCaCUggCUUCAG-UGGUGCUGUuau -5'
11369 5' -51.1 NC_003084.1 + 28578 0.66 0.976933
Target:  5'- aGGUGACCGAgAGUgUGCU-CGACGAg- -3'
miRNA:   3'- aCCACUGGCU-UCA-GUGGuGCUGUUau -5'
11369 5' -51.1 NC_003084.1 + 105308 0.66 0.974255
Target:  5'- gGGUGAuaCCGGAGcuggCACCGC-ACAAg- -3'
miRNA:   3'- aCCACU--GGCUUCa---GUGGUGcUGUUau -5'
11369 5' -51.1 NC_003084.1 + 56469 0.66 0.968233
Target:  5'- aGGUG-CUGcuGGUCACauguGCGACAGUGa -3'
miRNA:   3'- aCCACuGGCu-UCAGUGg---UGCUGUUAU- -5'
11369 5' -51.1 NC_003084.1 + 30402 0.67 0.964873
Target:  5'- aGuGUGAgUCGAGGcCACCauGCGACGGUGu -3'
miRNA:   3'- aC-CACU-GGCUUCaGUGG--UGCUGUUAU- -5'
11369 5' -51.1 NC_003084.1 + 100566 0.67 0.961272
Target:  5'- cGGUGAUguaGggGUUcggcuccuuguuGCCACGGCGAc- -3'
miRNA:   3'- aCCACUGg--CuuCAG------------UGGUGCUGUUau -5'
11369 5' -51.1 NC_003084.1 + 18362 0.67 0.94896
Target:  5'- gUGGUGAUUGAAG-CGCC-CGAgGGUu -3'
miRNA:   3'- -ACCACUGGCUUCaGUGGuGCUgUUAu -5'
11369 5' -51.1 NC_003084.1 + 90929 0.68 0.939449
Target:  5'- ---aGGCCGAGcGUUugCugGACAGUAu -3'
miRNA:   3'- accaCUGGCUU-CAGugGugCUGUUAU- -5'
11369 5' -51.1 NC_003084.1 + 30838 0.71 0.834615
Target:  5'- gGGUGACCGucGGuUCGCCguuACGACAc-- -3'
miRNA:   3'- aCCACUGGCu-UC-AGUGG---UGCUGUuau -5'
11369 5' -51.1 NC_003084.1 + 43528 0.71 0.834615
Target:  5'- cGGU-ACCGAAGagCACCugGACGGc- -3'
miRNA:   3'- aCCAcUGGCUUCa-GUGGugCUGUUau -5'
11369 5' -51.1 NC_003084.1 + 45946 0.72 0.748154
Target:  5'- gUGGUGACUucGGUCACCAaaaucaccgcCGACGAg- -3'
miRNA:   3'- -ACCACUGGcuUCAGUGGU----------GCUGUUau -5'
11369 5' -51.1 NC_003084.1 + 104313 0.73 0.706266
Target:  5'- aUGGcGGCCGAGGUCAgCAUcGCGAUGa -3'
miRNA:   3'- -ACCaCUGGCUUCAGUgGUGcUGUUAU- -5'
11369 5' -51.1 NC_003084.1 + 45820 1.07 0.007318
Target:  5'- uUGGUGACCGAAGUCACCACGACAAUAc -3'
miRNA:   3'- -ACCACUGGCUUCAGUGGUGCUGUUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.