miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1160 5' -45.8 NC_001132.2 + 6531 0.66 0.999991
Target:  5'- uAUACGGguaugUGUCGUGUAcgccuCGUAUCc -3'
miRNA:   3'- -UGUGCC-----GCAGCACAUauuuuGCAUAG- -5'
1160 5' -45.8 NC_001132.2 + 104577 0.66 0.999982
Target:  5'- uACACGuCGUa-UGUAcGGGACGUAUCa -3'
miRNA:   3'- -UGUGCcGCAgcACAUaUUUUGCAUAG- -5'
1160 5' -45.8 NC_001132.2 + 22413 0.67 0.999954
Target:  5'- gACACGGa--CGUGUAUuauuuuccaAAAACGUGUa -3'
miRNA:   3'- -UGUGCCgcaGCACAUA---------UUUUGCAUAg -5'
1160 5' -45.8 NC_001132.2 + 127012 0.67 0.999953
Target:  5'- -gACGGgaccgacagucuaCGUCGUGaUGUAAAcCGUGUCu -3'
miRNA:   3'- ugUGCC-------------GCAGCAC-AUAUUUuGCAUAG- -5'
1160 5' -45.8 NC_001132.2 + 25773 0.68 0.999818
Target:  5'- aACGCGGaCGaCGcgGUGgauuuugAAAACGUAUCg -3'
miRNA:   3'- -UGUGCC-GCaGCa-CAUa------UUUUGCAUAG- -5'
1160 5' -45.8 NC_001132.2 + 6778 0.69 0.999404
Target:  5'- cCGgGGCG-CGUGg---GAACGUGUCg -3'
miRNA:   3'- uGUgCCGCaGCACauauUUUGCAUAG- -5'
1160 5' -45.8 NC_001132.2 + 159606 0.69 0.999523
Target:  5'- gAUACGGCGUCGg----AAuACGUGUa -3'
miRNA:   3'- -UGUGCCGCAGCacauaUUuUGCAUAg -5'
1160 5' -45.8 NC_001132.2 + 81488 0.7 0.99863
Target:  5'- uACACGGCGUCucGUAUGuucuuACGUacGUCu -3'
miRNA:   3'- -UGUGCCGCAGcaCAUAUuu---UGCA--UAG- -5'
1160 5' -45.8 NC_001132.2 + 148440 0.7 0.997997
Target:  5'- gACGCGGUcguGUCGUGUucggugcAUGUAUCg -3'
miRNA:   3'- -UGUGCCG---CAGCACAuauuu--UGCAUAG- -5'
1160 5' -45.8 NC_001132.2 + 9712 0.72 0.995279
Target:  5'- uUACGGCGgUGUGUAUGAacGACGU-UCu -3'
miRNA:   3'- uGUGCCGCaGCACAUAUU--UUGCAuAG- -5'
1160 5' -45.8 NC_001132.2 + 49217 0.73 0.988685
Target:  5'- gACGCGGCGUCGuUGUuUAAAuACG-AUCc -3'
miRNA:   3'- -UGUGCCGCAGC-ACAuAUUU-UGCaUAG- -5'
1160 5' -45.8 NC_001132.2 + 159699 0.74 0.981309
Target:  5'- --cCGGCgGUCGUcGUAcAAGACGUGUCg -3'
miRNA:   3'- uguGCCG-CAGCA-CAUaUUUUGCAUAG- -5'
1160 5' -45.8 NC_001132.2 + 27278 1.1 0.02837
Target:  5'- aACACGGCGUCGUGUAUAAAACGUAUCc -3'
miRNA:   3'- -UGUGCCGCAGCACAUAUUUUGCAUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.