miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1165 5' -56.9 NC_001132.2 + 152582 0.66 0.916817
Target:  5'- uGACguccgGGACGCCGucuCGAuGGAUcCGUCc -3'
miRNA:   3'- -CUGag---CCUGCGGCu--GCU-CCUA-GCAGc -5'
1165 5' -56.9 NC_001132.2 + 5614 0.69 0.755536
Target:  5'- cGC-CGGACGCCuacACGAGGG-CGUUGa -3'
miRNA:   3'- cUGaGCCUGCGGc--UGCUCCUaGCAGC- -5'
1165 5' -56.9 NC_001132.2 + 38542 0.72 0.622783
Target:  5'- cGCaagCGGACGCCuuacguguaaagaacGACGAGGAuuccgcguUCGUCGa -3'
miRNA:   3'- cUGa--GCCUGCGG---------------CUGCUCCU--------AGCAGC- -5'
1165 5' -56.9 NC_001132.2 + 127692 0.88 0.076869
Target:  5'- --gUCcGACGCCGACGAGGAUCGUCGg -3'
miRNA:   3'- cugAGcCUGCGGCUGCUCCUAGCAGC- -5'
1165 5' -56.9 NC_001132.2 + 127650 1.09 0.003022
Target:  5'- aGACUCGGACGCCGACGAGGAUCGUCGg -3'
miRNA:   3'- -CUGAGCCUGCGGCUGCUCCUAGCAGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.