miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1169 5' -52.1 NC_001132.2 + 46392 0.66 0.988347
Target:  5'- uACGUCGAgguGCGugGUUgUCUCUaaaaagggcaaCACCGa -3'
miRNA:   3'- -UGUAGCU---UGCugCAGaAGAGG-----------GUGGU- -5'
1169 5' -52.1 NC_001132.2 + 152007 0.66 0.983064
Target:  5'- cACGUCGccagaugGACGGCGUg-UCUCCUACg- -3'
miRNA:   3'- -UGUAGC-------UUGCUGCAgaAGAGGGUGgu -5'
1169 5' -52.1 NC_001132.2 + 57516 0.68 0.961663
Target:  5'- gACAUC--GCGACGUCgucCUCCUguGCCGc -3'
miRNA:   3'- -UGUAGcuUGCUGCAGaa-GAGGG--UGGU- -5'
1169 5' -52.1 NC_001132.2 + 82783 0.69 0.945651
Target:  5'- gGCGuuUCGAACGuCGUCaUCUCugaaaCCACCGc -3'
miRNA:   3'- -UGU--AGCUUGCuGCAGaAGAG-----GGUGGU- -5'
1169 5' -52.1 NC_001132.2 + 9050 0.71 0.88156
Target:  5'- aACGagCGAACGACGUCUccugUCacuUCgCCACCAu -3'
miRNA:   3'- -UGUa-GCUUGCUGCAGA----AG---AG-GGUGGU- -5'
1169 5' -52.1 NC_001132.2 + 155703 0.71 0.88156
Target:  5'- cCAUCGcguUGACGUCggCUCCCGCa- -3'
miRNA:   3'- uGUAGCuu-GCUGCAGaaGAGGGUGgu -5'
1169 5' -52.1 NC_001132.2 + 153916 0.71 0.874296
Target:  5'- cGCcgUGAACGACGUCUcC-CCCGCg- -3'
miRNA:   3'- -UGuaGCUUGCUGCAGAaGaGGGUGgu -5'
1169 5' -52.1 NC_001132.2 + 139825 1 0.030135
Target:  5'- uACAUCG-ACGACGUCUUCUCCCACCAa -3'
miRNA:   3'- -UGUAGCuUGCUGCAGAAGAGGGUGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.