miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1188 3' -54.9 NC_001132.2 + 25372 0.67 0.869214
Target:  5'- aUUCUgaGGCGAGGaggauCUGGCGGCUcucucacaAGGCg -3'
miRNA:   3'- aAAGG--UUGCUCCg----GACCGCUGA--------UCUG- -5'
1188 3' -54.9 NC_001132.2 + 2419 0.68 0.861554
Target:  5'- -gUCCcGCGGGGUaUGGCGuCUccGGACa -3'
miRNA:   3'- aaAGGuUGCUCCGgACCGCuGA--UCUG- -5'
1188 3' -54.9 NC_001132.2 + 126945 0.69 0.802307
Target:  5'- --aUCGACGAcGGaCCUGGCGuguCUAGAa -3'
miRNA:   3'- aaaGGUUGCU-CC-GGACCGCu--GAUCUg -5'
1188 3' -54.9 NC_001132.2 + 156614 1.06 0.00481
Target:  5'- gUUUCCAACGAGGCCUGGCGACUAGACc -3'
miRNA:   3'- -AAAGGUUGCUCCGGACCGCUGAUCUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.