Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11914 | 3' | -61.1 | NC_003278.1 | + | 1888 | 0.66 | 0.26573 |
Target: 5'- -aGGGCGCUcuguaGGGCGCaGAaccacUCCGGCa- -3' miRNA: 3'- aaCUCGCGG-----UCCGCGcCU-----AGGUCGcg -5' |
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11914 | 3' | -61.1 | NC_003278.1 | + | 2453 | 0.67 | 0.227223 |
Target: 5'- ---uGUGCCAGGUGCc-AUCCAGCGa -3' miRNA: 3'- aacuCGCGGUCCGCGccUAGGUCGCg -5' |
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11914 | 3' | -61.1 | NC_003278.1 | + | 2742 | 0.69 | 0.178404 |
Target: 5'- uUUGgcAGgGCCAcgguGGCGCGGGUCC-GCGa -3' miRNA: 3'- -AAC--UCgCGGU----CCGCGCCUAGGuCGCg -5' |
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11914 | 3' | -61.1 | NC_003278.1 | + | 2917 | 0.7 | 0.135287 |
Target: 5'- aUGAugGCGCCcgAGGUGUcGGUCCAGCGg -3' miRNA: 3'- aACU--CGCGG--UCCGCGcCUAGGUCGCg -5' |
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11914 | 3' | -61.1 | NC_003278.1 | + | 3462 | 0.66 | 0.272639 |
Target: 5'- --aGGUGCCGGcCGCGGcucgCCAGaCGCg -3' miRNA: 3'- aacUCGCGGUCcGCGCCua--GGUC-GCG- -5' |
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11914 | 3' | -61.1 | NC_003278.1 | + | 4382 | 0.76 | 0.049196 |
Target: 5'- cUGGGCGCCAGGCGgguguuuguccgcUGGG-CCAGgGCg -3' miRNA: 3'- aACUCGCGGUCCGC-------------GCCUaGGUCgCG- -5' |
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11914 | 3' | -61.1 | NC_003278.1 | + | 6885 | 0.78 | 0.033614 |
Target: 5'- gUGGGCGCCGGGUuCGuuGUCCAGCGCc -3' miRNA: 3'- aACUCGCGGUCCGcGCc-UAGGUCGCG- -5' |
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11914 | 3' | -61.1 | NC_003278.1 | + | 8675 | 0.67 | 0.251682 |
Target: 5'- --cGGCGCCgccaccgAGGaCGCGGugcgugccuUCCAGCGUu -3' miRNA: 3'- aacUCGCGG-------UCC-GCGCCu--------AGGUCGCG- -5' |
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11914 | 3' | -61.1 | NC_003278.1 | + | 9389 | 0.66 | 0.286889 |
Target: 5'- ---uGCGCCAGGUGuuGua-CAGCGCc -3' miRNA: 3'- aacuCGCGGUCCGCgcCuagGUCGCG- -5' |
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11914 | 3' | -61.1 | NC_003278.1 | + | 9617 | 0.68 | 0.193547 |
Target: 5'- ---uGCGCCAGGCGCuGGccAUCC-GCGa -3' miRNA: 3'- aacuCGCGGUCCGCG-CC--UAGGuCGCg -5' |
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11914 | 3' | -61.1 | NC_003278.1 | + | 12839 | 0.74 | 0.066118 |
Target: 5'- cUGAGCG---GGCGCGGAugcugagcacgUCCGGCGCg -3' miRNA: 3'- aACUCGCgguCCGCGCCU-----------AGGUCGCG- -5' |
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11914 | 3' | -61.1 | NC_003278.1 | + | 13612 | 0.69 | 0.159856 |
Target: 5'- cUUGAGCGCCuGGcCGCcGAagCCcuGGCGCa -3' miRNA: 3'- -AACUCGCGGuCC-GCGcCUa-GG--UCGCG- -5' |
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11914 | 3' | -61.1 | NC_003278.1 | + | 13663 | 0.69 | 0.173595 |
Target: 5'- -cGGGCGCgCAGGCGCGccgCCuuguuGCGUu -3' miRNA: 3'- aaCUCGCG-GUCCGCGCcuaGGu----CGCG- -5' |
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11914 | 3' | -61.1 | NC_003278.1 | + | 13852 | 0.67 | 0.227223 |
Target: 5'- -gGGGCGCU-GGCGCcGAgcaCCAGgGCa -3' miRNA: 3'- aaCUCGCGGuCCGCGcCUa--GGUCgCG- -5' |
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11914 | 3' | -61.1 | NC_003278.1 | + | 15223 | 0.66 | 0.261653 |
Target: 5'- -aGAGCGCaucgAGGUGCcggccaugcugcccuGGAcgCCAGCGUu -3' miRNA: 3'- aaCUCGCGg---UCCGCG---------------CCUa-GGUCGCG- -5' |
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11914 | 3' | -61.1 | NC_003278.1 | + | 15895 | 0.66 | 0.272639 |
Target: 5'- gUUGAugGCGCCAuuGGcCGCcuGGAUCUGcGCGCg -3' miRNA: 3'- -AACU--CGCGGU--CC-GCG--CCUAGGU-CGCG- -5' |
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11914 | 3' | -61.1 | NC_003278.1 | + | 16075 | 0.75 | 0.058832 |
Target: 5'- gUGAGCGCgCGGGUGgGGuugCCGGCGg -3' miRNA: 3'- aACUCGCG-GUCCGCgCCua-GGUCGCg -5' |
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11914 | 3' | -61.1 | NC_003278.1 | + | 16132 | 0.66 | 0.272639 |
Target: 5'- ---cGUGCCuguuGCGCGG--CCAGCGCg -3' miRNA: 3'- aacuCGCGGuc--CGCGCCuaGGUCGCG- -5' |
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11914 | 3' | -61.1 | NC_003278.1 | + | 16171 | 0.73 | 0.0787 |
Target: 5'- -aGGGCGCCgcgcuGGGUGCGGAa--GGCGCg -3' miRNA: 3'- aaCUCGCGG-----UCCGCGCCUaggUCGCG- -5' |
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11914 | 3' | -61.1 | NC_003278.1 | + | 17418 | 0.68 | 0.204257 |
Target: 5'- cUGGGCGUCAGGCGuuGAcgcggCUGGCGa -3' miRNA: 3'- aACUCGCGGUCCGCgcCUa----GGUCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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