miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12280 3' -54.5 NC_003313.1 + 32397 0.66 0.620409
Target:  5'- -aUGCgGCGGCuuAC-UUCUucGCGUUGCu -3'
miRNA:   3'- cgACG-CGCCGuuUGcGAGA--CGCAACG- -5'
12280 3' -54.5 NC_003313.1 + 23493 0.66 0.585921
Target:  5'- -gUGCGCgGGCGAG-GCUUUGCGg--- -3'
miRNA:   3'- cgACGCG-CCGUUUgCGAGACGCaacg -5'
12280 3' -54.5 NC_003313.1 + 33003 0.68 0.497543
Target:  5'- uGCUGCGaagugaugcguugcaGGCAaaaagaAACGCagcgguuaggCUGCGUUGUg -3'
miRNA:   3'- -CGACGCg--------------CCGU------UUGCGa---------GACGCAACG- -5'
12280 3' -54.5 NC_003313.1 + 18626 0.68 0.485682
Target:  5'- uGCUGCGCuGGC-AugGC-CUGCa--GCg -3'
miRNA:   3'- -CGACGCG-CCGuUugCGaGACGcaaCG- -5'
12280 3' -54.5 NC_003313.1 + 4985 0.68 0.475016
Target:  5'- -gUGCGCGGCGGGCacauGCggCaGCGUgGCg -3'
miRNA:   3'- cgACGCGCCGUUUG----CGa-GaCGCAaCG- -5'
12280 3' -54.5 NC_003313.1 + 30780 0.68 0.464469
Target:  5'- uGgUGUGCgGGCAggUGCUUgGCGcgGCg -3'
miRNA:   3'- -CgACGCG-CCGUuuGCGAGaCGCaaCG- -5'
12280 3' -54.5 NC_003313.1 + 22436 0.68 0.464469
Target:  5'- uGCUGUGCGGU---UGCUgUUGCGuUUGUa -3'
miRNA:   3'- -CGACGCGCCGuuuGCGA-GACGC-AACG- -5'
12280 3' -54.5 NC_003313.1 + 25301 0.7 0.366447
Target:  5'- gGUUGUGCGGCuuuCGCUgCUGUugagGUUGUu -3'
miRNA:   3'- -CGACGCGCCGuuuGCGA-GACG----CAACG- -5'
12280 3' -54.5 NC_003313.1 + 18519 0.7 0.348625
Target:  5'- cUUGCGCGGCuGGCGUUCcacgcagGCGUucgaaaucuccUGCg -3'
miRNA:   3'- cGACGCGCCGuUUGCGAGa------CGCA-----------ACG- -5'
12280 3' -54.5 NC_003313.1 + 11488 0.71 0.298156
Target:  5'- --aGCGCuuacGCAAACGCUCcUGCGUgaaaaacUGCa -3'
miRNA:   3'- cgaCGCGc---CGUUUGCGAG-ACGCA-------ACG- -5'
12280 3' -54.5 NC_003313.1 + 17535 0.74 0.209842
Target:  5'- gGUUGUaaGCGGCGAACGCUuccaacacacccaCUGCGUaaccuuccaUGCg -3'
miRNA:   3'- -CGACG--CGCCGUUUGCGA-------------GACGCA---------ACG- -5'
12280 3' -54.5 NC_003313.1 + 4939 0.74 0.204647
Target:  5'- uCUGCGCGGCu-GCGUggUGCGUgguacUGCg -3'
miRNA:   3'- cGACGCGCCGuuUGCGagACGCA-----ACG- -5'
12280 3' -54.5 NC_003313.1 + 20912 0.75 0.188129
Target:  5'- uUUGCaGCGGC-GAUGCUCUGCGgcGUu -3'
miRNA:   3'- cGACG-CGCCGuUUGCGAGACGCaaCG- -5'
12280 3' -54.5 NC_003313.1 + 4653 1.14 0.000231
Target:  5'- gGCUGCGCGGCAAACGCUCUGCGUUGCa -3'
miRNA:   3'- -CGACGCGCCGUUUGCGAGACGCAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.