miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1229 5' -45.1 NC_001271.1 + 33120 0.66 0.992273
Target:  5'- -aCGAAUGGUGAACUUAC--CGUCUUc -3'
miRNA:   3'- uaGCUUAUUAUUUGGAUGucGCAGGA- -5'
1229 5' -45.1 NC_001271.1 + 38511 0.66 0.990936
Target:  5'- cAUCGAGUcggucaucAUGGGCC-ACAGCGcCCUu -3'
miRNA:   3'- -UAGCUUAu-------UAUUUGGaUGUCGCaGGA- -5'
1229 5' -45.1 NC_001271.1 + 29734 0.67 0.981326
Target:  5'- gGUCGAAccgAGUgcGAACCUGCccgguuGUGUCCa -3'
miRNA:   3'- -UAGCUUa--UUA--UUUGGAUGu-----CGCAGGa -5'
1229 5' -45.1 NC_001271.1 + 25987 0.67 0.97872
Target:  5'- -aCGGAUGGUGAACgCUcCAGaGUCCUc -3'
miRNA:   3'- uaGCUUAUUAUUUG-GAuGUCgCAGGA- -5'
1229 5' -45.1 NC_001271.1 + 17842 0.68 0.96929
Target:  5'- -gCGAugGUAAUcAGCUUcGCGGCGUCCa -3'
miRNA:   3'- uaGCU--UAUUAuUUGGA-UGUCGCAGGa -5'
1229 5' -45.1 NC_001271.1 + 29479 0.73 0.812045
Target:  5'- cGUUG-AUGGUGAuACCUAUGGUGUCCUg -3'
miRNA:   3'- -UAGCuUAUUAUU-UGGAUGUCGCAGGA- -5'
1229 5' -45.1 NC_001271.1 + 28386 0.74 0.73375
Target:  5'- -cUGAAUGAc-GugCUACAGCGUCCg -3'
miRNA:   3'- uaGCUUAUUauUugGAUGUCGCAGGa -5'
1229 5' -45.1 NC_001271.1 + 12300 1.06 0.010771
Target:  5'- cAUCGAAUAAUAAACCUACAGCGUCCUc -3'
miRNA:   3'- -UAGCUUAUUAUUUGGAUGUCGCAGGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.