miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12510 5' -53.8 NC_003345.1 + 49652 0.71 0.589342
Target:  5'- gGGUCGGCUUUAGcCGucuccaauucguacuGCUCGAUUGCu -3'
miRNA:   3'- aUCAGUCGGAGUCaGC---------------CGAGUUAGCG- -5'
12510 5' -53.8 NC_003345.1 + 34925 0.66 0.860277
Target:  5'- --cUCAGCgCUCGGcuaUGGCUCAGgugaCGCg -3'
miRNA:   3'- aucAGUCG-GAGUCa--GCCGAGUUa---GCG- -5'
12510 5' -53.8 NC_003345.1 + 70287 0.66 0.834634
Target:  5'- -cGUCAGCCUCcaucucaucgaGGUCGGUgUCAAaaGUa -3'
miRNA:   3'- auCAGUCGGAG-----------UCAGCCG-AGUUagCG- -5'
12510 5' -53.8 NC_003345.1 + 13485 0.66 0.834634
Target:  5'- -uGUCucGaCCUCGcUCGGCUCAAUCa- -3'
miRNA:   3'- auCAGu-C-GGAGUcAGCCGAGUUAGcg -5'
12510 5' -53.8 NC_003345.1 + 63545 0.68 0.766847
Target:  5'- aGGUCAGCCUguccgacgaguccCAcGUCGGCagGAgCGCc -3'
miRNA:   3'- aUCAGUCGGA-------------GU-CAGCCGagUUaGCG- -5'
12510 5' -53.8 NC_003345.1 + 46021 0.68 0.757677
Target:  5'- -cGUCGuaCUCGGUCGGgUCAG-CGUa -3'
miRNA:   3'- auCAGUcgGAGUCAGCCgAGUUaGCG- -5'
12510 5' -53.8 NC_003345.1 + 59338 0.68 0.72641
Target:  5'- gUGGUCggcgGGCCUU--UCGGCUUcAUCGCc -3'
miRNA:   3'- -AUCAG----UCGGAGucAGCCGAGuUAGCG- -5'
12510 5' -53.8 NC_003345.1 + 74379 0.69 0.661654
Target:  5'- cGGUCgaaagAGCgUCAG-CGGCUCAAuuUCGUc -3'
miRNA:   3'- aUCAG-----UCGgAGUCaGCCGAGUU--AGCG- -5'
12510 5' -53.8 NC_003345.1 + 4032 0.69 0.661654
Target:  5'- cGGUCGGCuCUC--UCGGCUCGuUCGa -3'
miRNA:   3'- aUCAGUCG-GAGucAGCCGAGUuAGCg -5'
12510 5' -53.8 NC_003345.1 + 2288 0.69 0.672578
Target:  5'- -cGUUAGCUUCGcaCGGCUCGAugaugugaaccUCGCg -3'
miRNA:   3'- auCAGUCGGAGUcaGCCGAGUU-----------AGCG- -5'
12510 5' -53.8 NC_003345.1 + 59521 0.68 0.747367
Target:  5'- --cUCGGCCUUcuccaAG-CGGCUCuGGUCGCu -3'
miRNA:   3'- aucAGUCGGAG-----UCaGCCGAG-UUAGCG- -5'
12510 5' -53.8 NC_003345.1 + 4890 0.66 0.834634
Target:  5'- gGGUUcGUCUCGGUCGucguaGCUCGAUgCGUc -3'
miRNA:   3'- aUCAGuCGGAGUCAGC-----CGAGUUA-GCG- -5'
12510 5' -53.8 NC_003345.1 + 38245 0.66 0.843405
Target:  5'- -cGUCGGCgUCA--CGGUguUCGGUCGCc -3'
miRNA:   3'- auCAGUCGgAGUcaGCCG--AGUUAGCG- -5'
12510 5' -53.8 NC_003345.1 + 23751 0.66 0.851956
Target:  5'- --cUCGGCCUCGGUC-GCUUcuUCGa -3'
miRNA:   3'- aucAGUCGGAGUCAGcCGAGuuAGCg -5'
12510 5' -53.8 NC_003345.1 + 4692 1.11 0.001356
Target:  5'- gUAGUCAGCCUCAGUCGGCUCAAUCGCa -3'
miRNA:   3'- -AUCAGUCGGAGUCAGCCGAGUUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.