miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12515 3' -52.5 NC_003345.1 + 23677 0.66 0.933853
Target:  5'- aGGGAugGGucacGAACAGGcCGUC-GCc-- -3'
miRNA:   3'- -CCCUugCC----UUUGUCCaGCAGuCGcuc -5'
12515 3' -52.5 NC_003345.1 + 19221 0.66 0.933853
Target:  5'- ---cACGGAGAaagAGGUCGcgcaaCAGCGAGa -3'
miRNA:   3'- cccuUGCCUUUg--UCCAGCa----GUCGCUC- -5'
12515 3' -52.5 NC_003345.1 + 61189 0.66 0.922736
Target:  5'- uGGAACGGAgucauuucgAGCuGGUCGUCugAGCc-- -3'
miRNA:   3'- cCCUUGCCU---------UUGuCCAGCAG--UCGcuc -5'
12515 3' -52.5 NC_003345.1 + 30613 0.66 0.922736
Target:  5'- --cGACGGAGAC-GGUCugcuUUAGCGAGa -3'
miRNA:   3'- cccUUGCCUUUGuCCAGc---AGUCGCUC- -5'
12515 3' -52.5 NC_003345.1 + 61588 0.66 0.922736
Target:  5'- cGGAA-GGAAcucaAGGUCGgUCAGCGGc -3'
miRNA:   3'- cCCUUgCCUUug--UCCAGC-AGUCGCUc -5'
12515 3' -52.5 NC_003345.1 + 9739 0.66 0.922736
Target:  5'- aGGAACGGAAGCGaGaaacCAGCGAGu -3'
miRNA:   3'- cCCUUGCCUUUGUcCagcaGUCGCUC- -5'
12515 3' -52.5 NC_003345.1 + 74827 0.66 0.916776
Target:  5'- uGGAGuuCGGAGACGcuGGUauugaGcCAGCGAGg -3'
miRNA:   3'- cCCUU--GCCUUUGU--CCAg----CaGUCGCUC- -5'
12515 3' -52.5 NC_003345.1 + 73072 0.67 0.91055
Target:  5'- uGGGAACGccgcGAGAacGGUCGccaUAGCGAGg -3'
miRNA:   3'- -CCCUUGC----CUUUguCCAGCa--GUCGCUC- -5'
12515 3' -52.5 NC_003345.1 + 55020 0.68 0.875511
Target:  5'- cGGAuucucguCGGGAACgAGGUCGUgGGaCGAa -3'
miRNA:   3'- cCCUu------GCCUUUG-UCCAGCAgUC-GCUc -5'
12515 3' -52.5 NC_003345.1 + 18698 0.68 0.859755
Target:  5'- uGGGAGCcgguggacgaaGGAAACGucgcGGUUGUCAcCGAGu -3'
miRNA:   3'- -CCCUUG-----------CCUUUGU----CCAGCAGUcGCUC- -5'
12515 3' -52.5 NC_003345.1 + 47449 0.68 0.859755
Target:  5'- ----uCGG-AACAGGUCGUCAGCc-- -3'
miRNA:   3'- cccuuGCCuUUGUCCAGCAGUCGcuc -5'
12515 3' -52.5 NC_003345.1 + 58856 0.68 0.857311
Target:  5'- cGGGAUGGAgugcuacgugaaggGugGGGaCGUUGGCGAGc -3'
miRNA:   3'- cCCUUGCCU--------------UugUCCaGCAGUCGCUC- -5'
12515 3' -52.5 NC_003345.1 + 68408 0.71 0.695986
Target:  5'- uGGAcgGCGGcGAGCGGGuUCGUCAuCGAGa -3'
miRNA:   3'- cCCU--UGCC-UUUGUCC-AGCAGUcGCUC- -5'
12515 3' -52.5 NC_003345.1 + 31102 0.72 0.67456
Target:  5'- gGGGAACGGAugUucGUCGUCGGgGuGg -3'
miRNA:   3'- -CCCUUGCCUuuGucCAGCAGUCgCuC- -5'
12515 3' -52.5 NC_003345.1 + 1112 0.73 0.609668
Target:  5'- cGGGGCGGaAAACAGGgggCGgccCGGCGAa -3'
miRNA:   3'- cCCUUGCC-UUUGUCCa--GCa--GUCGCUc -5'
12515 3' -52.5 NC_003345.1 + 34199 0.74 0.556008
Target:  5'- cGGGAAgGGGAACAcGGUCa--AGCGGGu -3'
miRNA:   3'- -CCCUUgCCUUUGU-CCAGcagUCGCUC- -5'
12515 3' -52.5 NC_003345.1 + 23121 0.74 0.524454
Target:  5'- aGGGAGCGGGuuCuGGUUGuUCAGCGc- -3'
miRNA:   3'- -CCCUUGCCUuuGuCCAGC-AGUCGCuc -5'
12515 3' -52.5 NC_003345.1 + 71599 0.79 0.285098
Target:  5'- gGGGGACGGAAGCucaaccucgGGGUCGauuccagcccgcUCAGCGAa -3'
miRNA:   3'- -CCCUUGCCUUUG---------UCCAGC------------AGUCGCUc -5'
12515 3' -52.5 NC_003345.1 + 10554 1.12 0.002116
Target:  5'- gGGGAACGGAAACAGGUCGUCAGCGAGg -3'
miRNA:   3'- -CCCUUGCCUUUGUCCAGCAGUCGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.