miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12518 3' -52.5 NC_003345.1 + 54730 0.66 0.919111
Target:  5'- -aG-CGUC-CCGAgUCGGCGGAGAcACg -3'
miRNA:   3'- ugCgGCAGuGGUUgAGCCGUCUUU-UG- -5'
12518 3' -52.5 NC_003345.1 + 30695 0.66 0.912882
Target:  5'- -aGCCGggaguCCGACUCGGaaccgagAGGGAACg -3'
miRNA:   3'- ugCGGCagu--GGUUGAGCCg------UCUUUUG- -5'
12518 3' -52.5 NC_003345.1 + 33427 0.66 0.906379
Target:  5'- aGCGCCGaggagaaguCCAAgUgGGCAGAGGAg -3'
miRNA:   3'- -UGCGGCagu------GGUUgAgCCGUCUUUUg -5'
12518 3' -52.5 NC_003345.1 + 72852 0.66 0.899603
Target:  5'- aACuUCGUCGCCGucuCUUGGUAGAGcGGCg -3'
miRNA:   3'- -UGcGGCAGUGGUu--GAGCCGUCUU-UUG- -5'
12518 3' -52.5 NC_003345.1 + 46626 0.66 0.899603
Target:  5'- cACGCCccGUCAaucaucacgucCCAAaugaacgCGGCGGGAAGCu -3'
miRNA:   3'- -UGCGG--CAGU-----------GGUUga-----GCCGUCUUUUG- -5'
12518 3' -52.5 NC_003345.1 + 69827 0.66 0.892559
Target:  5'- uCGUCGUCGCCGccgacgcagAUUCGGCA---AACg -3'
miRNA:   3'- uGCGGCAGUGGU---------UGAGCCGUcuuUUG- -5'
12518 3' -52.5 NC_003345.1 + 75290 0.67 0.885251
Target:  5'- cCGCC-UCACCAGCagGGCuGAAc-- -3'
miRNA:   3'- uGCGGcAGUGGUUGagCCGuCUUuug -5'
12518 3' -52.5 NC_003345.1 + 27724 0.67 0.885251
Target:  5'- gACGauuaCCGUgACCGACUCGGCuacGucAACc -3'
miRNA:   3'- -UGC----GGCAgUGGUUGAGCCGu--CuuUUG- -5'
12518 3' -52.5 NC_003345.1 + 51140 0.67 0.885251
Target:  5'- -gGUCGUCACCGACUUGGacgcucGCg -3'
miRNA:   3'- ugCGGCAGUGGUUGAGCCgucuuuUG- -5'
12518 3' -52.5 NC_003345.1 + 33431 0.67 0.885251
Target:  5'- cACGCCGUCguaAUCGAgUCGGaAGuAAACg -3'
miRNA:   3'- -UGCGGCAG---UGGUUgAGCCgUCuUUUG- -5'
12518 3' -52.5 NC_003345.1 + 11981 0.67 0.885251
Target:  5'- -gGuuGUCACCGAgguaUgGGUAGGGAACc -3'
miRNA:   3'- ugCggCAGUGGUUg---AgCCGUCUUUUG- -5'
12518 3' -52.5 NC_003345.1 + 67944 0.67 0.877683
Target:  5'- -gGCUaUCgACCGACUCGgGCAGGAGGu -3'
miRNA:   3'- ugCGGcAG-UGGUUGAGC-CGUCUUUUg -5'
12518 3' -52.5 NC_003345.1 + 73542 0.67 0.853485
Target:  5'- -gGCCGguaucacucCAUCGAgUCGGCAGAAcccGGCg -3'
miRNA:   3'- ugCGGCa--------GUGGUUgAGCCGUCUU---UUG- -5'
12518 3' -52.5 NC_003345.1 + 17945 0.67 0.853485
Target:  5'- aAUGCCGUcCACggaaGAC-CGGCgAGAAGGCu -3'
miRNA:   3'- -UGCGGCA-GUGg---UUGaGCCG-UCUUUUG- -5'
12518 3' -52.5 NC_003345.1 + 58813 0.67 0.853485
Target:  5'- aACGCCGUCGuguuCCGcaagcgucugaACgCGGCGGAGAu- -3'
miRNA:   3'- -UGCGGCAGU----GGU-----------UGaGCCGUCUUUug -5'
12518 3' -52.5 NC_003345.1 + 26306 0.68 0.844944
Target:  5'- aACGUCGUagaGCCAcgUCaGCGGGAGACu -3'
miRNA:   3'- -UGCGGCAg--UGGUugAGcCGUCUUUUG- -5'
12518 3' -52.5 NC_003345.1 + 58495 0.68 0.836179
Target:  5'- cCGCCcUCGuCCuguuguaaucaAGCUCGGCGGAGAGg -3'
miRNA:   3'- uGCGGcAGU-GG-----------UUGAGCCGUCUUUUg -5'
12518 3' -52.5 NC_003345.1 + 31139 0.68 0.83529
Target:  5'- aACGCCGUCagccuccGCUGACggugCGGCAcGAAAu- -3'
miRNA:   3'- -UGCGGCAG-------UGGUUGa---GCCGU-CUUUug -5'
12518 3' -52.5 NC_003345.1 + 43581 0.69 0.778422
Target:  5'- uACGCCcaaucaguucaugGUCACgGACUaCGGCgAGggGAUa -3'
miRNA:   3'- -UGCGG-------------CAGUGgUUGA-GCCG-UCuuUUG- -5'
12518 3' -52.5 NC_003345.1 + 14938 0.69 0.769363
Target:  5'- aACGuauCCGUCACCGuacucgUUCGGCGGGucGCa -3'
miRNA:   3'- -UGC---GGCAGUGGUu-----GAGCCGUCUuuUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.