miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12518 5' -52.7 NC_003345.1 + 17405 0.66 0.901479
Target:  5'- ----gCCGUGU-UCGGGCUGUUCGAGg -3'
miRNA:   3'- uccaaGGUGCGaAGCUCGACAAGCUC- -5'
12518 5' -52.7 NC_003345.1 + 28826 0.66 0.901479
Target:  5'- cGaGUUCUACGggU--GGCUGUUCGAGa -3'
miRNA:   3'- uC-CAAGGUGCgaAgcUCGACAAGCUC- -5'
12518 5' -52.7 NC_003345.1 + 42115 0.66 0.914536
Target:  5'- aGGGUUcCCACGagUCGGGCguuucgUCGGGu -3'
miRNA:   3'- -UCCAA-GGUGCgaAGCUCGaca---AGCUC- -5'
12518 5' -52.7 NC_003345.1 + 58129 0.67 0.847645
Target:  5'- cGGGcUUCAUccgGCUgUCGAGCUGUUCGu- -3'
miRNA:   3'- -UCCaAGGUG---CGA-AGCUCGACAAGCuc -5'
12518 5' -52.7 NC_003345.1 + 33763 0.67 0.859369
Target:  5'- gAGGccUCC-CGCUgguucaUCGAGCUGUcaaacucgauauaguUCGAGu -3'
miRNA:   3'- -UCCa-AGGuGCGA------AGCUCGACA---------------AGCUC- -5'
12518 5' -52.7 NC_003345.1 + 47325 0.67 0.879906
Target:  5'- cGGcGUUCaucaGCgUCGGGCUGUUCGGc -3'
miRNA:   3'- -UC-CAAGgug-CGaAGCUCGACAAGCUc -5'
12518 5' -52.7 NC_003345.1 + 24239 0.68 0.842485
Target:  5'- aAGGUcacucaucgagcguuUCCACGCaUCGAGg-GUUCGGu -3'
miRNA:   3'- -UCCA---------------AGGUGCGaAGCUCgaCAAGCUc -5'
12518 5' -52.7 NC_003345.1 + 64034 0.73 0.547764
Target:  5'- ---cUCUGCGCUUCGAccucGUUGUUCGAGa -3'
miRNA:   3'- uccaAGGUGCGAAGCU----CGACAAGCUC- -5'
12518 5' -52.7 NC_003345.1 + 29965 0.74 0.505627
Target:  5'- ---aUCUACGC--CGAGCUGUUCGGGg -3'
miRNA:   3'- uccaAGGUGCGaaGCUCGACAAGCUC- -5'
12518 5' -52.7 NC_003345.1 + 12733 1.1 0.002317
Target:  5'- gAGGUUCCACGCUUCGAGCUGUUCGAGg -3'
miRNA:   3'- -UCCAAGGUGCGAAGCUCGACAAGCUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.