miRNA display CGI


Results 1 - 7 of 7 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12523 5' -55.1 NC_003345.1 + 40511 0.66 0.810364
Target:  5'- ---aACUcgAUGGGuucgGGCGCGGGugGUAu -3'
miRNA:   3'- ccgaUGA--UGCCCu---UCGUGCCCugCAU- -5'
12523 5' -55.1 NC_003345.1 + 40482 0.66 0.791554
Target:  5'- cGGCaACUACGGGAagaaucccgacaAGUACGaaGGACu-- -3'
miRNA:   3'- -CCGaUGAUGCCCU------------UCGUGC--CCUGcau -5'
12523 5' -55.1 NC_003345.1 + 60015 0.67 0.741927
Target:  5'- aGCUGa-ACGGGAAGCACGucaaaGACGg- -3'
miRNA:   3'- cCGAUgaUGCCCUUCGUGCc----CUGCau -5'
12523 5' -55.1 NC_003345.1 + 67582 0.67 0.772107
Target:  5'- cGCgACaugaaGCGGGAuuuuaAGCGCGGGAUGg- -3'
miRNA:   3'- cCGaUGa----UGCCCU-----UCGUGCCCUGCau -5'
12523 5' -55.1 NC_003345.1 + 59505 0.67 0.73164
Target:  5'- cGGCUcuggucGCUACGGGAAucggcgcucuGCugGucGGugGUGg -3'
miRNA:   3'- -CCGA------UGAUGCCCUU----------CGugC--CCugCAU- -5'
12523 5' -55.1 NC_003345.1 + 63256 0.68 0.678986
Target:  5'- cGGaUGCUACGGuGGguAGCACGGG-CGa- -3'
miRNA:   3'- -CCgAUGAUGCC-CU--UCGUGCCCuGCau -5'
12523 5' -55.1 NC_003345.1 + 16445 1.09 0.001706
Target:  5'- gGGCUACUACGGGAAGCACGGGACGUAu -3'
miRNA:   3'- -CCGAUGAUGCCCUUCGUGCCCUGCAU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.