miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12530 5' -60.3 NC_003345.1 + 67143 0.66 0.548535
Target:  5'- gUCGGACGggucgggGUcgUUCCCACCaCuCCCAc -3'
miRNA:   3'- -AGCCUGCa------CGaaGAGGGUGGcG-GGGU- -5'
12530 5' -60.3 NC_003345.1 + 75467 0.67 0.508545
Target:  5'- ----gUGUGCUUCUUCCuCCGCCCa- -3'
miRNA:   3'- agccuGCACGAAGAGGGuGGCGGGgu -5'
12530 5' -60.3 NC_003345.1 + 35565 0.68 0.441816
Target:  5'- aCGG-CGaGCUUCUUCCcguuacgaACCGCUCCGa -3'
miRNA:   3'- aGCCuGCaCGAAGAGGG--------UGGCGGGGU- -5'
12530 5' -60.3 NC_003345.1 + 6375 0.69 0.355788
Target:  5'- -aGaGGCGUGCUucaUCUCCCACUuCCCUc -3'
miRNA:   3'- agC-CUGCACGA---AGAGGGUGGcGGGGu -5'
12530 5' -60.3 NC_003345.1 + 28573 0.7 0.343162
Target:  5'- gCGGAUGUgagguucgagccauuGCgcccaaucCUCCCACgGCCCCAu -3'
miRNA:   3'- aGCCUGCA---------------CGaa------GAGGGUGgCGGGGU- -5'
12530 5' -60.3 NC_003345.1 + 221 0.7 0.332381
Target:  5'- gCGGGCc-GUcUCUCCCcCCGCCCCc -3'
miRNA:   3'- aGCCUGcaCGaAGAGGGuGGCGGGGu -5'
12530 5' -60.3 NC_003345.1 + 77508 0.7 0.332381
Target:  5'- gCGGGCc-GUcUCUCCCcCCGCCCCc -3'
miRNA:   3'- aGCCUGcaCGaAGAGGGuGGCGGGGu -5'
12530 5' -60.3 NC_003345.1 + 22284 1.08 0.000614
Target:  5'- uUCGGACGUGCUUCUCCCACCGCCCCAu -3'
miRNA:   3'- -AGCCUGCACGAAGAGGGUGGCGGGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.