miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12544 5' -56.2 NC_003345.1 + 27551 0.67 0.682135
Target:  5'- uUUCgUCCACGUccauucGAGCGuGGUCggUCa -3'
miRNA:   3'- -AAGgAGGUGCAu-----CUCGC-CCAGuuGGa -5'
12544 5' -56.2 NC_003345.1 + 55711 0.68 0.628281
Target:  5'- cUCgUCCGgcggugGUGGGGCGGGUgAACCc -3'
miRNA:   3'- aAGgAGGUg-----CAUCUCGCCCAgUUGGa -5'
12544 5' -56.2 NC_003345.1 + 14655 0.68 0.617482
Target:  5'- gUUCCggugCgACGUGGAGCGuGUCGugCUu -3'
miRNA:   3'- -AAGGa---GgUGCAUCUCGCcCAGUugGA- -5'
12544 5' -56.2 NC_003345.1 + 69306 0.68 0.617482
Target:  5'- gUUCCgcgaCCuguuCGUGGAGCaGGUUGACCa -3'
miRNA:   3'- -AAGGa---GGu---GCAUCUCGcCCAGUUGGa -5'
12544 5' -56.2 NC_003345.1 + 12463 0.68 0.605617
Target:  5'- -aCCUCCACG-AGAGCGGaguuucggguaacGUCcuuGCCg -3'
miRNA:   3'- aaGGAGGUGCaUCUCGCC-------------CAGu--UGGa -5'
12544 5' -56.2 NC_003345.1 + 74439 0.68 0.585193
Target:  5'- aUCCUCCGCaaGGAGguCGGGgCGGCCa -3'
miRNA:   3'- aAGGAGGUGcaUCUC--GCCCaGUUGGa -5'
12544 5' -56.2 NC_003345.1 + 72864 0.69 0.525982
Target:  5'- -gUCUCUugGUAGAGCGGcGUCuguuucgugauugauAGCCg -3'
miRNA:   3'- aaGGAGGugCAUCUCGCC-CAG---------------UUGGa -5'
12544 5' -56.2 NC_003345.1 + 35682 0.72 0.378944
Target:  5'- gUCCUCCACGgacguagcucggucGGGCGGcUCGGCCUg -3'
miRNA:   3'- aAGGAGGUGCau------------CUCGCCcAGUUGGA- -5'
12544 5' -56.2 NC_003345.1 + 43111 0.72 0.36947
Target:  5'- -aCCUCCACGgGGAGCGGGaCAggaAUCUu -3'
miRNA:   3'- aaGGAGGUGCaUCUCGCCCaGU---UGGA- -5'
12544 5' -56.2 NC_003345.1 + 33330 1.05 0.002199
Target:  5'- gUUCCUCCACGUAGAGCGGGUCAACCUu -3'
miRNA:   3'- -AAGGAGGUGCAUCUCGCCCAGUUGGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.