miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12550 5' -51.9 NC_003345.1 + 38569 0.66 0.94501
Target:  5'- cGGAACc-CUGCUCUgccGAggUcGCGGAa -3'
miRNA:   3'- -CCUUGcuGACGAGGa--CUuuGuCGCCU- -5'
12550 5' -51.9 NC_003345.1 + 12255 0.66 0.94501
Target:  5'- aGAACGAaccCUGCUCCg--GugGGcCGGAg -3'
miRNA:   3'- cCUUGCU---GACGAGGacuUugUC-GCCU- -5'
12550 5' -51.9 NC_003345.1 + 16358 0.66 0.940116
Target:  5'- cGAacGCGACcGCUUcgagagggagCUGGAACgAGCGGAu -3'
miRNA:   3'- cCU--UGCUGaCGAG----------GACUUUG-UCGCCU- -5'
12550 5' -51.9 NC_003345.1 + 17470 0.66 0.940116
Target:  5'- cGGAACGACgaUGCUguucaagauuUCUGAu---GCGGAg -3'
miRNA:   3'- -CCUUGCUG--ACGA----------GGACUuuguCGCCU- -5'
12550 5' -51.9 NC_003345.1 + 50790 0.66 0.934949
Target:  5'- -uAACGGCgGCggugGAAACGGCGGGg -3'
miRNA:   3'- ccUUGCUGaCGaggaCUUUGUCGCCU- -5'
12550 5' -51.9 NC_003345.1 + 12790 0.66 0.923793
Target:  5'- cGAACGucCUGUUCCUG-AACGGaCGuGAu -3'
miRNA:   3'- cCUUGCu-GACGAGGACuUUGUC-GC-CU- -5'
12550 5' -51.9 NC_003345.1 + 9180 0.67 0.911539
Target:  5'- --uACGACUucGCUCUUGAAGgAGCaGAg -3'
miRNA:   3'- ccuUGCUGA--CGAGGACUUUgUCGcCU- -5'
12550 5' -51.9 NC_003345.1 + 7356 0.67 0.911539
Target:  5'- cGGAACGGCuUGCUcgggucuugucCCUGAGuc-GUGGAc -3'
miRNA:   3'- -CCUUGCUG-ACGA-----------GGACUUuguCGCCU- -5'
12550 5' -51.9 NC_003345.1 + 15367 0.67 0.905003
Target:  5'- cGAGCGuuUGCUCCgaUGggGCAGUa-- -3'
miRNA:   3'- cCUUGCugACGAGG--ACuuUGUCGccu -5'
12550 5' -51.9 NC_003345.1 + 31557 0.68 0.860277
Target:  5'- cGGGACGACUGC-CgUGuAAucgaguacgacACGGCGGc -3'
miRNA:   3'- -CCUUGCUGACGaGgAC-UU-----------UGUCGCCu -5'
12550 5' -51.9 NC_003345.1 + 13309 0.68 0.860277
Target:  5'- aGGAACGuCgGCUCC-GAAGuCAGCGa- -3'
miRNA:   3'- -CCUUGCuGaCGAGGaCUUU-GUCGCcu -5'
12550 5' -51.9 NC_003345.1 + 13217 0.69 0.825651
Target:  5'- cGGAGcCGAC-GUUCCUGAAGaagcGUGGAa -3'
miRNA:   3'- -CCUU-GCUGaCGAGGACUUUgu--CGCCU- -5'
12550 5' -51.9 NC_003345.1 + 73858 0.71 0.694301
Target:  5'- cGGGGCGACUuCgaCUUGAuGGCGGCGGAg -3'
miRNA:   3'- -CCUUGCUGAcGa-GGACU-UUGUCGCCU- -5'
12550 5' -51.9 NC_003345.1 + 24660 0.72 0.672578
Target:  5'- aGGACGACcGCUCCUugauaGGAACAggucGCGGGc -3'
miRNA:   3'- cCUUGCUGaCGAGGA-----CUUUGU----CGCCU- -5'
12550 5' -51.9 NC_003345.1 + 4128 0.75 0.479299
Target:  5'- aGGAugGACUGUUCUaccugUGGGACAcCGGAg -3'
miRNA:   3'- -CCUugCUGACGAGG-----ACUUUGUcGCCU- -5'
12550 5' -51.9 NC_003345.1 + 36537 1.12 0.002251
Target:  5'- uGGAACGACUGCUCCUGAAACAGCGGAg -3'
miRNA:   3'- -CCUUGCUGACGAGGACUUUGUCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.