miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12553 3' -59.1 NC_003345.1 + 67167 0.66 0.618631
Target:  5'- aCCACuCCCAccGUCGCUUUCGuuGCCGc -3'
miRNA:   3'- cGGUGuGGGUuaCAGCGGGGGC--UGGC- -5'
12553 3' -59.1 NC_003345.1 + 64970 0.66 0.618631
Target:  5'- aCCAuUACCgGAgGUCGCCCaCGGCCu -3'
miRNA:   3'- cGGU-GUGGgUUaCAGCGGGgGCUGGc -5'
12553 3' -59.1 NC_003345.1 + 45549 0.67 0.587574
Target:  5'- cGCCACGucgUCguGUGUCGCCUCguucgggagguUGACCGu -3'
miRNA:   3'- -CGGUGU---GGguUACAGCGGGG-----------GCUGGC- -5'
12553 3' -59.1 NC_003345.1 + 45970 0.67 0.586543
Target:  5'- aGCCACcgGCCCAAUccucgggGUCaagCCCCGugCGa -3'
miRNA:   3'- -CGGUG--UGGGUUA-------CAGcg-GGGGCugGC- -5'
12553 3' -59.1 NC_003345.1 + 66957 0.67 0.556814
Target:  5'- uCCACGCCUAcgGUCGCgucggucguguCUCUGACuCGg -3'
miRNA:   3'- cGGUGUGGGUuaCAGCG-----------GGGGCUG-GC- -5'
12553 3' -59.1 NC_003345.1 + 63299 0.68 0.516576
Target:  5'- aCCACAUCgGAUGcguccUCGCUCaCCGGCCc -3'
miRNA:   3'- cGGUGUGGgUUAC-----AGCGGG-GGCUGGc -5'
12553 3' -59.1 NC_003345.1 + 73759 0.69 0.477556
Target:  5'- cGCCAUcaAgUCGAaGUCGCCCCgGACgGg -3'
miRNA:   3'- -CGGUG--UgGGUUaCAGCGGGGgCUGgC- -5'
12553 3' -59.1 NC_003345.1 + 67931 0.69 0.468027
Target:  5'- aGCCAUACUCGcgGUCaGUCCgaUUGACCGa -3'
miRNA:   3'- -CGGUGUGGGUuaCAG-CGGG--GGCUGGC- -5'
12553 3' -59.1 NC_003345.1 + 898 0.69 0.454854
Target:  5'- gGCCGgaaccggagagaacUACCCGGagacGUacuuaccCGCCCCCGACCGu -3'
miRNA:   3'- -CGGU--------------GUGGGUUa---CA-------GCGGGGGCUGGC- -5'
12553 3' -59.1 NC_003345.1 + 5886 0.69 0.44927
Target:  5'- -aCACACCaaaGGUGUCGCCgUCGuACUGg -3'
miRNA:   3'- cgGUGUGGg--UUACAGCGGgGGC-UGGC- -5'
12553 3' -59.1 NC_003345.1 + 73308 0.69 0.434566
Target:  5'- aGCCACGCCCGAUucgacggcgaaccucGUCGuggaaCCCCUGuCCc -3'
miRNA:   3'- -CGGUGUGGGUUA---------------CAGC-----GGGGGCuGGc -5'
12553 3' -59.1 NC_003345.1 + 64275 0.7 0.421039
Target:  5'- uGUCGCAUaugggauUCAGcguUGUCGCCCCCGuucggGCCGg -3'
miRNA:   3'- -CGGUGUG-------GGUU---ACAGCGGGGGC-----UGGC- -5'
12553 3' -59.1 NC_003345.1 + 48571 0.7 0.387089
Target:  5'- cGUCACuaACCCGAUGaacCG-CCCCGGCCa -3'
miRNA:   3'- -CGGUG--UGGGUUACa--GCgGGGGCUGGc -5'
12553 3' -59.1 NC_003345.1 + 68587 0.74 0.220106
Target:  5'- cCCGC-CCCAcggGUgGCCCCgCGACCGa -3'
miRNA:   3'- cGGUGuGGGUua-CAgCGGGG-GCUGGC- -5'
12553 3' -59.1 NC_003345.1 + 37789 1.09 0.0007
Target:  5'- uGCCACACCCAAUGUCGCCCCCGACCGu -3'
miRNA:   3'- -CGGUGUGGGUUACAGCGGGGGCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.