miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12555 3' -57.9 NC_003345.1 + 51672 0.66 0.697936
Target:  5'- cUUGCCCGGAACCgGAuucacGCaucgaGGGGUGgGa -3'
miRNA:   3'- -AGCGGGCCUUGGgCU-----CG-----UCUCAUgCa -5'
12555 3' -57.9 NC_003345.1 + 73129 0.66 0.697936
Target:  5'- -aGUCgCGGAACCuCcAGCAGAGggaagACGUa -3'
miRNA:   3'- agCGG-GCCUUGG-GcUCGUCUCa----UGCA- -5'
12555 3' -57.9 NC_003345.1 + 60693 0.66 0.697936
Target:  5'- -gGCgCGGGAUUCG-GCAcGAGUGCGa -3'
miRNA:   3'- agCGgGCCUUGGGCuCGU-CUCAUGCa -5'
12555 3' -57.9 NC_003345.1 + 12362 0.67 0.593136
Target:  5'- -gGCuCCGGcccACCgGAGCAGGGUuCGUu -3'
miRNA:   3'- agCG-GGCCu--UGGgCUCGUCUCAuGCA- -5'
12555 3' -57.9 NC_003345.1 + 23132 0.68 0.578515
Target:  5'- aCGCCCGcucuccccgaCCGAGCGGAG-ACGg -3'
miRNA:   3'- aGCGGGCcuug------GGCUCGUCUCaUGCa -5'
12555 3' -57.9 NC_003345.1 + 25953 0.68 0.551587
Target:  5'- aCGCCCGGAcaACCgcauCGAGCAuccGGUACa- -3'
miRNA:   3'- aGCGGGCCU--UGG----GCUCGUc--UCAUGca -5'
12555 3' -57.9 NC_003345.1 + 30936 0.68 0.541328
Target:  5'- -aGCCCGucacuucuuGAACCCGAGCGGaAGgccCGUc -3'
miRNA:   3'- agCGGGC---------CUUGGGCUCGUC-UCau-GCA- -5'
12555 3' -57.9 NC_003345.1 + 18266 0.68 0.531134
Target:  5'- gUCGUCCGGcaacggucauGGCCCGAaCGGAG-ACGUu -3'
miRNA:   3'- -AGCGGGCC----------UUGGGCUcGUCUCaUGCA- -5'
12555 3' -57.9 NC_003345.1 + 15338 0.69 0.52101
Target:  5'- --aCCCGGAGaacgacgacCCCGAGCAGGGaUACa- -3'
miRNA:   3'- agcGGGCCUU---------GGGCUCGUCUC-AUGca -5'
12555 3' -57.9 NC_003345.1 + 62883 0.71 0.372322
Target:  5'- -aGCCCucaGAGuCCCGAGCAGGGUagACGa -3'
miRNA:   3'- agCGGGc--CUU-GGGCUCGUCUCA--UGCa -5'
12555 3' -57.9 NC_003345.1 + 62847 0.71 0.372322
Target:  5'- uUCGCCCGGAGgccagcguaggcCCCGAcGUGGAGUAg-- -3'
miRNA:   3'- -AGCGGGCCUU------------GGGCU-CGUCUCAUgca -5'
12555 3' -57.9 NC_003345.1 + 67978 0.72 0.355854
Target:  5'- gCGCCgGGcuucuuAAUCCG-GCGGAGUGCGUu -3'
miRNA:   3'- aGCGGgCC------UUGGGCuCGUCUCAUGCA- -5'
12555 3' -57.9 NC_003345.1 + 61066 0.74 0.255226
Target:  5'- aCGCUCGGguGugCCGAGUuuGGAGUGCGa -3'
miRNA:   3'- aGCGGGCC--UugGGCUCG--UCUCAUGCa -5'
12555 3' -57.9 NC_003345.1 + 38813 1.07 0.001284
Target:  5'- gUCGCCCGGAACCCGAGCAGAGUACGUu -3'
miRNA:   3'- -AGCGGGCCUUGGGCUCGUCUCAUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.