miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12568 3' -52.1 NC_003345.1 + 46894 0.66 0.940889
Target:  5'- aCGA-CGG-CGAggGCGCgGUCGUGGAg -3'
miRNA:   3'- aGUUcGCCaGCU--UGCGaUAGCACCUg -5'
12568 3' -52.1 NC_003345.1 + 30835 0.66 0.932565
Target:  5'- aUCGAGCGuUCGAugGaaaacguccucaaGUCGUGGAa -3'
miRNA:   3'- -AGUUCGCcAGCUugCga-----------UAGCACCUg -5'
12568 3' -52.1 NC_003345.1 + 27289 0.66 0.930374
Target:  5'- uUCAgGGCGGUCGAAucguccgguCGCaaguUCGUGGuauCg -3'
miRNA:   3'- -AGU-UCGCCAGCUU---------GCGau--AGCACCu--G- -5'
12568 3' -52.1 NC_003345.1 + 26517 0.66 0.92982
Target:  5'- uUCAAGCGcgaacuuGUgGAGCGCccaguaGUUGUGGAUu -3'
miRNA:   3'- -AGUUCGC-------CAgCUUGCGa-----UAGCACCUG- -5'
12568 3' -52.1 NC_003345.1 + 14600 0.66 0.918763
Target:  5'- -gGAGCGGUCugGAGCGUUccacggcgcUCGUGGGu -3'
miRNA:   3'- agUUCGCCAG--CUUGCGAu--------AGCACCUg -5'
12568 3' -52.1 NC_003345.1 + 63486 0.67 0.899299
Target:  5'- ---cGCGGUCGcg-GUUGaccUCGUGGACg -3'
miRNA:   3'- aguuCGCCAGCuugCGAU---AGCACCUG- -5'
12568 3' -52.1 NC_003345.1 + 29898 0.67 0.884246
Target:  5'- -gAGGCGGUCGccccACGgUAUCGggcgcuucuuuucUGGACu -3'
miRNA:   3'- agUUCGCCAGCu---UGCgAUAGC-------------ACCUG- -5'
12568 3' -52.1 NC_003345.1 + 9775 0.69 0.827156
Target:  5'- uUCGGGaauCGGUCGGucgGCGUUGuucacggcgacUCGUGGGCu -3'
miRNA:   3'- -AGUUC---GCCAGCU---UGCGAU-----------AGCACCUG- -5'
12568 3' -52.1 NC_003345.1 + 14755 0.69 0.80867
Target:  5'- aUCGAGCGGUUguacgaGGAUGCUcugguGUCcGUGGAa -3'
miRNA:   3'- -AGUUCGCCAG------CUUGCGA-----UAG-CACCUg -5'
12568 3' -52.1 NC_003345.1 + 40060 0.69 0.78945
Target:  5'- --cAGCGGcUCGAACGCggcUCGUcGGAg -3'
miRNA:   3'- aguUCGCC-AGCUUGCGau-AGCA-CCUg -5'
12568 3' -52.1 NC_003345.1 + 62592 1.1 0.002717
Target:  5'- cUCAAGCGGUCGAACGCUAUCGUGGACu -3'
miRNA:   3'- -AGUUCGCCAGCUUGCGAUAGCACCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.