miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12577 3' -51.1 NC_003345.1 + 60900 0.66 0.968849
Target:  5'- uGCGAAGAcccucgauggguuagGCGACAAUC-UGGuuGaCGa -3'
miRNA:   3'- -CGCUUCU---------------UGCUGUUAGcAUCggCgGC- -5'
12577 3' -51.1 NC_003345.1 + 8770 0.66 0.967544
Target:  5'- aGCGAGGuggcCGAgcUAAUCG-GGCCGCUu -3'
miRNA:   3'- -CGCUUCuu--GCU--GUUAGCaUCGGCGGc -5'
12577 3' -51.1 NC_003345.1 + 34403 0.66 0.967212
Target:  5'- cGCGAuuGAGgGACAGUCGcAGaccggacUCGCCGc -3'
miRNA:   3'- -CGCUu-CUUgCUGUUAGCaUC-------GGCGGC- -5'
12577 3' -51.1 NC_003345.1 + 40181 0.66 0.964114
Target:  5'- gGCGAcGAGCGAgacuaccuccgaCGAgccgCGUucgAGCCGCUGu -3'
miRNA:   3'- -CGCUuCUUGCU------------GUUa---GCA---UCGGCGGC- -5'
12577 3' -51.1 NC_003345.1 + 21143 0.66 0.964114
Target:  5'- cGUGGAGGuaauCGACGgaAUCGUgauggagcGGUCGCCc -3'
miRNA:   3'- -CGCUUCUu---GCUGU--UAGCA--------UCGGCGGc -5'
12577 3' -51.1 NC_003345.1 + 14598 0.66 0.963758
Target:  5'- aGCGGucuGGAgcguuccACGGCGcUCGUGGgUCGCCa -3'
miRNA:   3'- -CGCU---UCU-------UGCUGUuAGCAUC-GGCGGc -5'
12577 3' -51.1 NC_003345.1 + 50440 0.66 0.960438
Target:  5'- gGCGAAGcuCGu--AUCGggagguggAGCCGCUGg -3'
miRNA:   3'- -CGCUUCuuGCuguUAGCa-------UCGGCGGC- -5'
12577 3' -51.1 NC_003345.1 + 14516 0.66 0.960057
Target:  5'- cGgGAAGugGACGACGGccCGUAGCUcaggauaGCCGa -3'
miRNA:   3'- -CgCUUC--UUGCUGUUa-GCAUCGG-------CGGC- -5'
12577 3' -51.1 NC_003345.1 + 10912 0.66 0.95651
Target:  5'- uCGggGAGgGAgcaguccuuaCAGUUGUcGCCGCUGg -3'
miRNA:   3'- cGCuuCUUgCU----------GUUAGCAuCGGCGGC- -5'
12577 3' -51.1 NC_003345.1 + 31012 0.66 0.952324
Target:  5'- uUGAGGGuguuCGACcucUCGccGCCGCCGg -3'
miRNA:   3'- cGCUUCUu---GCUGuu-AGCauCGGCGGC- -5'
12577 3' -51.1 NC_003345.1 + 20471 0.66 0.952324
Target:  5'- cCGAAGGguuCGAgAGUCGcuucgaGGUCGCCGg -3'
miRNA:   3'- cGCUUCUu--GCUgUUAGCa-----UCGGCGGC- -5'
12577 3' -51.1 NC_003345.1 + 3013 0.66 0.952324
Target:  5'- cCGggGAGuCGAacccCGgAGCCGCCGc -3'
miRNA:   3'- cGCuuCUU-GCUguuaGCaUCGGCGGC- -5'
12577 3' -51.1 NC_003345.1 + 53931 0.67 0.947876
Target:  5'- cGCGGAGGuuuucgucCGACucgCGguucucGCCGCCGg -3'
miRNA:   3'- -CGCUUCUu-------GCUGuuaGCau----CGGCGGC- -5'
12577 3' -51.1 NC_003345.1 + 29563 0.67 0.947876
Target:  5'- aGCGAAGAcuACGcCGA-CGaAGCCGCg- -3'
miRNA:   3'- -CGCUUCU--UGCuGUUaGCaUCGGCGgc -5'
12577 3' -51.1 NC_003345.1 + 73736 0.67 0.943161
Target:  5'- -aGAGGAcGCGAUGGggcgCGgAGCCGCUGa -3'
miRNA:   3'- cgCUUCU-UGCUGUUa---GCaUCGGCGGC- -5'
12577 3' -51.1 NC_003345.1 + 47175 0.67 0.943161
Target:  5'- gGUGAagcAGGGCGGCAagcGUCGUGG-CGCUc -3'
miRNA:   3'- -CGCU---UCUUGCUGU---UAGCAUCgGCGGc -5'
12577 3' -51.1 NC_003345.1 + 72873 0.67 0.938177
Target:  5'- gGCGAgcGGAugGACu-UC---GCCGCCGa -3'
miRNA:   3'- -CGCU--UCUugCUGuuAGcauCGGCGGC- -5'
12577 3' -51.1 NC_003345.1 + 24704 0.67 0.927394
Target:  5'- gGCGuuccguacuucGAGGGCGACcucccggCGUccuGCCGCCGa -3'
miRNA:   3'- -CGC-----------UUCUUGCUGuua----GCAu--CGGCGGC- -5'
12577 3' -51.1 NC_003345.1 + 2326 0.67 0.927394
Target:  5'- gGCGAggaAGAACGcucuccCAAUUG-AGCCGUCGc -3'
miRNA:   3'- -CGCU---UCUUGCu-----GUUAGCaUCGGCGGC- -5'
12577 3' -51.1 NC_003345.1 + 28847 0.67 0.927394
Target:  5'- --cGAGAACGACcucgauuacgaAAUCGccggGGUCGCCGg -3'
miRNA:   3'- cgcUUCUUGCUG-----------UUAGCa---UCGGCGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.