miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12626 3' -55.7 NC_003345.1 + 12641 0.66 0.810422
Target:  5'- cGAAGcguGGAACCUcGCccggcaguuuUCUGCCGAGu -3'
miRNA:   3'- cCUUCug-CCUUGGGaCG----------AGACGGCUC- -5'
12626 3' -55.7 NC_003345.1 + 12253 0.66 0.801183
Target:  5'- -cAAGAacGAACCCUGCUCcgguggGCCGGa -3'
miRNA:   3'- ccUUCUgcCUUGGGACGAGa-----CGGCUc -5'
12626 3' -55.7 NC_003345.1 + 58112 0.66 0.762659
Target:  5'- aGGAAGACGuuAUCCgcgacCUCgaaGCCGAGa -3'
miRNA:   3'- -CCUUCUGCcuUGGGac---GAGa--CGGCUC- -5'
12626 3' -55.7 NC_003345.1 + 14515 0.66 0.762659
Target:  5'- gGGAAG-UGGAcgacgGCCCguaGCUCaggauaGCCGAGa -3'
miRNA:   3'- -CCUUCuGCCU-----UGGGa--CGAGa-----CGGCUC- -5'
12626 3' -55.7 NC_003345.1 + 4925 0.67 0.729329
Target:  5'- uGGAAGcggcgacgaaagcaACGcGAAUCCUGUUCUGgagauucgaCCGAGg -3'
miRNA:   3'- -CCUUC--------------UGC-CUUGGGACGAGAC---------GGCUC- -5'
12626 3' -55.7 NC_003345.1 + 13303 0.7 0.584379
Target:  5'- uGGGAGAC-GAACUcggCUGUUCcGCCGGGa -3'
miRNA:   3'- -CCUUCUGcCUUGG---GACGAGaCGGCUC- -5'
12626 3' -55.7 NC_003345.1 + 15425 0.7 0.573804
Target:  5'- uGGAAGACGGAuACCCcaucuacuccCUCUacGCCGGGc -3'
miRNA:   3'- -CCUUCUGCCU-UGGGac--------GAGA--CGGCUC- -5'
12626 3' -55.7 NC_003345.1 + 29101 0.7 0.532028
Target:  5'- cGGAuucGCGGAGCCUgaugGCUCUacgaaGCCGAa -3'
miRNA:   3'- -CCUuc-UGCCUUGGGa---CGAGA-----CGGCUc -5'
12626 3' -55.7 NC_003345.1 + 47225 0.71 0.501428
Target:  5'- uGGAAGAUGaGAGCggCCUGCUgaGCCGu- -3'
miRNA:   3'- -CCUUCUGC-CUUG--GGACGAgaCGGCuc -5'
12626 3' -55.7 NC_003345.1 + 17653 0.74 0.354282
Target:  5'- uGAAGAUGGAAgCCaacucGCUCUGCUGAa -3'
miRNA:   3'- cCUUCUGCCUUgGGa----CGAGACGGCUc -5'
12626 3' -55.7 NC_003345.1 + 38562 1.11 0.001012
Target:  5'- uGGAAGACGGAACCCUGCUCUGCCGAGg -3'
miRNA:   3'- -CCUUCUGCCUUGGGACGAGACGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.