Results 1 - 11 of 11 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 12636 | 5' | -49.3 | NC_003345.1 | + | 22825 | 0.66 | 0.982599 |
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Target: 5'- ----cGAAGGcgUCCGG-CGGCUucaGCUCg -3' miRNA: 3'- agcuaUUUCCa-AGGUCuGCCGA---UGAG- -5' |
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| 12636 | 5' | -49.3 | NC_003345.1 | + | 56783 | 0.66 | 0.980342 |
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Target: 5'- aCGGUucuGGUUCU-GACGGCUcuACUUc -3' miRNA: 3'- aGCUAuuuCCAAGGuCUGCCGA--UGAG- -5' |
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| 12636 | 5' | -49.3 | NC_003345.1 | + | 23269 | 0.66 | 0.977874 |
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Target: 5'- uUCGAUGcuucGGGauagcaaCAG-CGGCUACUCg -3' miRNA: 3'- -AGCUAUu---UCCaag----GUCuGCCGAUGAG- -5' |
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| 12636 | 5' | -49.3 | NC_003345.1 | + | 55824 | 0.66 | 0.975184 |
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Target: 5'- -aGAUGGGGGUUCUGGugGuGgUGCg- -3' miRNA: 3'- agCUAUUUCCAAGGUCugC-CgAUGag -5' |
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| 12636 | 5' | -49.3 | NC_003345.1 | + | 50348 | 0.67 | 0.965692 |
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Target: 5'- gCGGUGGAGGUg-CuGGCGGCUcCUUc -3' miRNA: 3'- aGCUAUUUCCAagGuCUGCCGAuGAG- -5' |
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| 12636 | 5' | -49.3 | NC_003345.1 | + | 30794 | 0.68 | 0.93963 |
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Target: 5'- gCGAUAAguGGGgagaGGGCGGCUACa- -3' miRNA: 3'- aGCUAUU--UCCaaggUCUGCCGAUGag -5' |
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| 12636 | 5' | -49.3 | NC_003345.1 | + | 22660 | 0.68 | 0.934306 |
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Target: 5'- aCGGcGAGGGUa--AGuCGGCUACUCa -3' miRNA: 3'- aGCUaUUUCCAaggUCuGCCGAUGAG- -5' |
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| 12636 | 5' | -49.3 | NC_003345.1 | + | 1789 | 0.69 | 0.928694 |
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Target: 5'- aCG-UAAAGGUUCCAG-CGgaaGCUACcUCg -3' miRNA: 3'- aGCuAUUUCCAAGGUCuGC---CGAUG-AG- -5' |
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| 12636 | 5' | -49.3 | NC_003345.1 | + | 50114 | 0.69 | 0.910129 |
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Target: 5'- gCGGUGGAGGUggCGGugGaGCUAUUa -3' miRNA: 3'- aGCUAUUUCCAagGUCugC-CGAUGAg -5' |
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| 12636 | 5' | -49.3 | NC_003345.1 | + | 21695 | 0.72 | 0.811669 |
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Target: 5'- cUCGGgc--GGUUCCAG-CGGCUccagcgGCUCg -3' miRNA: 3'- -AGCUauuuCCAAGGUCuGCCGA------UGAG- -5' |
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| 12636 | 5' | -49.3 | NC_003345.1 | + | 48538 | 1.12 | 0.003801 |
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Target: 5'- gUCGAUAAAGGUUCCAGACGGCUACUCg -3' miRNA: 3'- -AGCUAUUUCCAAGGUCUGCCGAUGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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